AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

May 10, 2022 05:45PM
Hi, Philipp-

Hmm, I am not sure what the issue here is. Could you please run your same command above but also include "-echo" as an option, and then dump a copy of the terminal output to a text file, too. If you are using bash/zsh, this would be done as:
@SSwarper -input anat+orig. -base MNI2009_to_MNI+tlrc.BRIK -subid sswarp_anat2mni \
    -echo \
    2>&1 | tee o.ssw.txt
... and if you are using tcsh/csh, this would be done as:
@SSwarper -input anat+orig. -base MNI2009_to_MNI+tlrc.BRIK -subid sswarp_anat2mni \
    -echo \
   |& tee o.ssw.txt
Then could you please email me the o.ssw.txt text, so I can check it. (If you click on my username in the MB interface here, you will see my email.)

Separately (or perhaps related... but this should not be the cause of your error above) but importantly, when running @SSwarper, you should use only one of the available SSW reference sets as a base:
These are special versions of known templates, because they have multiple volumes. So, probably you should be running with:
-base MNI152_2009_template_SSW.nii.gz
But let's troubleshoot the first issue first.

Subject Author Posted

@SUMA_AlignToExperiment Bug?

shanaadise December 08, 2016 07:55PM

Re: @SUMA_AlignToExperiment Bug?

rick reynolds December 09, 2016 02:53PM

Re: @SUMA_AlignToExperiment Bug?

philippn May 03, 2022 03:56PM

Re: @SUMA_AlignToExperiment Bug?

rick reynolds May 03, 2022 04:08PM

Re: @SUMA_AlignToExperiment Bug?

rick reynolds May 03, 2022 04:45PM

Re: @SUMA_AlignToExperiment Bug? Attachments

philippn May 10, 2022 05:31PM

Re: @SUMA_AlignToExperiment Bug?

ptaylor May 10, 2022 05:45PM

Re: @SUMA_AlignToExperiment Bug?

philippn May 10, 2022 06:54PM

Re: @SUMA_AlignToExperiment Bug?

philippn June 02, 2022 12:37PM

Re: @SUMA_AlignToExperiment Bug?

ptaylor June 02, 2022 12:45PM

Re: @SUMA_AlignToExperiment Bug?

ptaylor June 02, 2022 07:07PM