AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 27, 2018 09:20AM
Hey folks, more fun and exciting testing of ETAC has led to a few issues.

Issue the first:
The error appears to be related to file compression, which I have set as active in .afnirc. Relevant text:

++ 3dMultiThresh: AFNI version=AFNI_18.2.04 (Jul  6 2018) [64-bit]
++ -mthresh dataset parameters
 +      clustering NN=2  thresholding=1-sided  4 thresholds  2 hpows
++ MultiThresh cluster FOM threshold method = cdf 90.0%
++ Output dataset group_etac/hc/pre_pain_only_etac.ETACtmask.1pos.B0.0.nii.gz
++ Output dataset group_etac/hc/pre_pain_only_etac.ETACamask.1pos.B0.0.nii.gz
14413
++ 3dMultiThresh: AFNI version=AFNI_18.2.04 (Jul  6 2018) [64-bit]
++ -mthresh dataset parameters
 +      clustering NN=2  thresholding=1-sided  4 thresholds  2 hpows
++ MultiThresh cluster FOM threshold method = cdf 90.0%
++ Output dataset group_etac/hc/pre_pain_only_etac.ETACtmask.1pos.B5.0.nii.gz
++ Output dataset group_etac/hc/pre_pain_only_etac.ETACamask.1pos.B5.0.nii.gz
18675
++ processing 1 input datasets...
++ padding all datasets by 0 (for dilations)
** FATAL ERROR: failed to open mask dataset 'group_etac/hc/pre_pain_only_etac.ETACtmask.1pos.*.nii'
** Program compile date = Jul  6 2018
++ 3dbucket: AFNI version=AFNI_18.2.04 (Jul  6 2018) [64-bit]
** ERROR (nifti_image_read): failed to find header file for 'group_etac/hc/pre_pain_only_etac.ETACamask.1pos.*.nii'
can't open dataset group_etac/hc/pre_pain_only_etac.ETACamask.1pos.*.nii
++ 3dttest++ ----- merging 2 blur cases to make neg 1-sided activation mask

Specifically, it says it writes the *ETACtmask.1pos file as a .nii.gz, but then cannot load it later. I checked, they are definitely there, and definitely compressed.

Would an fix be resetting the compression environment variable and then running (beautiful and slow) ETAC in that terminal window? Want to make sure I know the right ones to set.

Issue the second

My ETAC run output, including the basic 3dttest++ maps are +orig as far as AFNI can tell. I cannot overlay them onto the AFNI templates. This is not an issue when I use 3dMEMA on the same data, and all input, including the group mask are TLRC. Any thoughts? Could this be related to my above compression obsession?

I'll see if I can do a bit more testing, in time. Thanks for any help!
Subject Author Posted

ETAC, fatal errors - perhaps due to compression?

dowdlelt July 27, 2018 09:20AM

Re: ETAC, fatal errors - perhaps due to compression?

dowdlelt July 30, 2018 04:14PM

Re: ETAC, fatal errors - perhaps due to compression?

dowdlelt August 02, 2018 02:57PM

Re: ETAC, fatal errors - perhaps due to compression?

ptaylor August 02, 2018 07:54PM

Re: ETAC, fatal errors - perhaps due to compression?

dowdlelt August 03, 2018 09:10AM

Re: ETAC, fatal errors - perhaps due to compression?

ptaylor August 03, 2018 10:13AM

Re: ETAC, fatal errors - perhaps due to compression?

dowdlelt August 03, 2018 12:03PM

Re: ETAC, fatal errors - perhaps due to compression?

ptaylor August 03, 2018 01:37PM

Re: ETAC, fatal errors - perhaps due to compression?

dowdlelt August 08, 2018 10:14AM

Re: ETAC, fatal errors - perhaps due to compression?

rick reynolds August 06, 2018 09:37AM

Re: ETAC, fatal errors - perhaps due to compression?

dowdlelt August 08, 2018 10:15AM

Re: ETAC, fatal errors - perhaps due to compression?

rick reynolds August 08, 2018 10:22AM

Re: ETAC, fatal errors - perhaps due to compression?

dowdlelt August 08, 2018 12:04PM