AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Daniel Glen
January 04, 2017 03:04PM
For the first question, you should replace the appropriate parts of the command you pasted, so the TR gets 3.000, prefix is followed by the name you want for the output, and the input volumes are the names of your EPI dataset volume files (maybe *.nii where the asterisk is a wildcard character).

The approximate TR will probably work unless you have a thousand TRs, and then the later TRs could be off by a second. Still it doesn't really hurt to set the TR exactly. The slice timing can be set with the 3dTcat command by adding "-tpattern alt+z" to get interleaved slice timing.
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Subject Author Posted

Creating a single .nii.gz from .nii files

heretic133 January 04, 2017 03:15AM

Re: Creating a single .nii.gz from .nii files

rick reynolds January 04, 2017 07:57AM

Re: Creating a single .nii.gz from .nii files

heretic133 January 04, 2017 09:42AM

Re: Creating a single .nii.gz from .nii files

rick reynolds January 04, 2017 10:10AM

Re: Creating a single .nii.gz from .nii files

heretic133 January 04, 2017 10:31AM

Re: Creating a single .nii.gz from .nii files

heretic133 January 04, 2017 11:53AM

Re: Creating a single .nii.gz from .nii files

Daniel Glen January 04, 2017 03:04PM

Re: Creating a single .nii.gz from .nii files

heretic133 January 07, 2017 02:23PM

Re: Creating a single .nii.gz from .nii files

rick reynolds January 07, 2017 05:35PM