AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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heretic133
January 07, 2017 02:54PM
Hi
I have several .nii files for a single object and I'm trying to put them in a single file. When I use
3dTcat -tr 3.0 -prefix output+orig *.nii
everything works fine and the program generates 2 files for me. But I have two questions:

1: My slices are interleaved, how can I specify it in 3dTcat? I know that I should use something like this " fred+orig[0..$(2),1..$(2)] " but I don't know where to put this sentence.

2: Is there anyway of generating a single .nii.gz file instead of a BRIK and a HEAD file?
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Subject Author Posted

How to specify interleaved slices in 3dTcat

heretic133 January 07, 2017 02:54PM

Re: How to specify interleaved slices in 3dTcat

rick reynolds January 07, 2017 05:37PM