AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 12, 2017 09:06AM
Yes, 'extents' should have been just 'extent' in the
earlier grep command. If you are not familiar with
running 3dinfo on a dataset to see the details, it
would be good to try out.

But there are a few small things that lead to a
9 or 10 times scaling in the size:

1. The voxels will come out at 1.75mm^3 unless
you specify otherwise. That scales the size by a
factor of 2.4 (1.7969*1.7969*4 / (1.75^3)).

2. The "extents" of the dataset are larger, to fill
the box of the template. That probably doubles
the size.

3. The data are eventually processed as 32-bit
floats, not 16-bit short integers. That doubles
the size.

So the data size will be scaled by 9.6 (2.4*2*2),
unless you specify otherwise.


Using voxels of 2mm^3 will scale the size by
2/3 or so (1.75^3/2^3).

Also, use -regress_compute_fitts, which saves
about 40% RAM in the 3dDeconvolve command.

- rick
Subject Author Posted

afni_align_epi_anat results in very data size

ttngu207 January 10, 2017 11:19AM

Re: afni_align_epi_anat results in very data size

rick reynolds January 10, 2017 12:10PM

Re: afni_align_epi_anat results in very data size

ttngu207 January 10, 2017 12:33PM

Re: afni_align_epi_anat results in very data size

ttngu207 January 11, 2017 01:49PM

Re: afni_align_epi_anat results in very data size

Bob Cox January 11, 2017 03:19PM

Re: afni_align_epi_anat results in very data size

rick reynolds January 12, 2017 09:06AM

Re: afni_align_epi_anat results in very data size

ttngu207 January 12, 2017 01:08PM

Re: afni_align_epi_anat results in very data size

rick reynolds January 12, 2017 01:53PM