AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 10, 2017 12:23PM
Hi! I just wanted ask others have experienced the issue. I generated an afni proc script and results folder using the new afni. When I checked the results folder, none of the files are in tlrc space? I pasted the proc script below. Any info would be greatly appreciated.

def create_afni_proc_for_subject_ert(subject):
template = '''afni_proc.py -subj_id {subj}
-script {output_dir}/afni.proc -scr_overwrite
-out_dir {output_dir}/results
-blocks tshift align tlrc volreg blur mask scale regress
-copy_anat {anat_dir}/{anat}+orig
-tcat_remove_first_trs {delete_nfirst}
-dsets
{dsets}
-volreg_align_to last
-volreg_align_e2a
-align_opts_aea -cost lpc+ZZ -giant_move
-tlrc_NL_warp
-blur_size 6
-regress_stim_times
{stim_dir}/{subj}_look_timing.1D
{stim_dir}/{subj}_maintain_timing.1D
{stim_dir}/{subj}_reappraise_timing.1D
-regress_stim_labels
look maintain reappraise
-regress_basis 'BLOCK(20,1)'
-regress_censor_motion {motion_max}
-regress_censor_outliers 0.1
-regress_reml_exec
-regress_compute_fitts
-regress_opts_3dD
-gltsym 'SYM: +look +maintain +reappraise'
-glt_label 1 Positive_Control
-jobs 12
-regress_make_ideal_sum sum_ideal.1D
-regress_est_blur_epits
-regress_est_blur_errts
'''
Subject Author Posted

New Afni orig and TLRC space??

cgcapistrano January 10, 2017 12:23PM

Re: New Afni orig and TLRC space??

rick reynolds January 18, 2017 08:47AM