AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 15, 2017 02:23PM
Hi,
My anat (1mmX1mmX1mm each voxel) and EPI datasets (1.5mmX1.5mmX1.5mm) were preprocessed using uber_subject.py before with the steps of auto block,despike,align,tlrc,volreg,blur,mask,scale and regress.Then ROIs were drawn on the basis of anat datasets.And I had spent too much time on drawing these ROIs.
Now a few days after that, the data is analyzed using a new pipeline: auto block,tshift,resample,despike,align,tlrc,volreg,mask,scale and regress.That is, tshift is done additionally just after auto block and the functional datasets are resampled to anat and blur isn't done to keep the higher resolution.I know the ROIs drawn before will not fit the functional datesets with new analysis any more.But I really want to save my time to find methods for transforming the ROIs drawn on the anat which was aligned to the old functional datesets in previous analysis to fit the new functional datasets.
Thank you!
Jogi



Edited 1 time(s). Last edit at 01/15/2017 02:30PM by Jogi Ho.
Subject Author Posted

How to transform the ROIs drawn before to fit the new functional datesets?

Ren Po January 15, 2017 02:23PM

Re: How to transform the ROIs drawn before to fit the new functional datesets?

rick reynolds January 17, 2017 10:38AM

Re: How to transform the ROIs drawn before to fit the new functional datesets?

Ren Po January 17, 2017 11:12PM

Re: How to transform the ROIs drawn before to fit the new functional datesets?

rick reynolds January 18, 2017 07:59AM

Re: How to transform the ROIs drawn before to fit the new functional datesets?

Ren Po January 19, 2017 04:57PM