AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 16, 2017 12:32AM
Dear AFNI expert,

After updating AFNI, I did 3dMVM with script like below (table.txt included paths for MNI spaced cope files)

3dMVM -prefix Emo_MVM -jobs 8 -bsVars 1 -wsVars "var01*var02" -wsE2 -num_glt 12 \
-mask MNI152_T1_2mm_brain_mask.nii.gz \
-gltLabel 1 c01_vs_c02 -gltCode 1 'var01 : 1*c01 var02 : 1*c02 -1*c03' \
....
-gltLabel 12 .... \
-dataTable @table.txt

Unfortunately, I faced on error messages.

1) Error messages encountered like below:
Welcome to afex. Important changes in the current version:
- Functions for ANOVAs have been renamed to: aov_car(), aov_ez(), and aov_4().
- ANOVA functions return an object of class 'afex_aov' as default, see: ?aov_car
- 'afex_aov' objects can be passed to lsmeans for contrasts and follow-up tests.
- Reset previous (faster) behavior via: afex_options(return_aov='nice')
- Many more arguments can now be set globally via options, see: afex_options()
************
load package: car
Loading required package: snow
Error in checkForRemoteErrors(val) :
2 nodes produced errors; first error: length is 0
Calls: aperm ... clusterApply -> staticClusterApply -> checkForRemoteErrors
warning messages:
In summary.Anova.mlm(object$Anova, multivariate = FALSE) :
HF eps > 1 treated as 1

2) after change from -jobs 8 to -jobs 1, the error message encountered like below:
load package: car
Error in if (p_wsmvt < uvfm$anova[ii, "Pr(>F)"]) out[ii] <- qf(p_wsmvt, :
length is 0
Calls: aperm -> apply -> FUN
warning messages:
In summary.Anova.mlm(object$Anova, multivariate = FALSE) :
HF eps > 1 treated as 1

It will be great pleasure if know the solution for error messages.
Thank you,
Jeong
Subject Author Posted

3dMVM error message

drshrink January 16, 2017 12:32AM

Re: 3dMVM error message

gang January 17, 2017 08:29AM

Re: 3dMVM error message

drshrink January 18, 2017 07:38AM

Re: 3dMVM error message

gang January 18, 2017 04:03PM