AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 18, 2017 07:38AM
Hi Gang,

It turns out the error messages derived from both -wsE2 option and wrong path for R package.
Thank you so much.

I have one question regarding output.
I expected I could get the same number of t-stats image as the no. of gltLabel (in my case, 12).
However, just one output file was produced after performing 3dMVM script.
Here is the output which was printed in terminal.

++ Smallest FDR q [0 (Intercept) F] = 6.99541e-07
++ Smallest FDR q [1 c01 F] = 7.63635e-08
++ Smallest FDR q [2 c02 F] = 4.77009e-13
++ Smallest FDR q [3 c01:c02 F] = 3.48735e-05
++ Smallest FDR q [5 .... t] = 6.70835e-07
++ Smallest FDR q [7 ... t] = 3.05506e-08
++ Smallest FDR q [9 ... t] = 0.00627071
++ Smallest FDR q [11 _vs_ t] = 1.56036e-08
++ Smallest FDR q [13 _vs_ t] = 1.54795e-06
++ Smallest FDR q [15 _vs_ t] = 8.3346e-06
++ Smallest FDR q [17 _vs_ t] = 0.00029295
++ Smallest FDR q [19 _vs_ t] = 1.13479e-06
++ Smallest FDR q [21 2way_interaction t] = 0.00208255
*+ WARNING: Smallest FDR q [23 2way_interaction t] = 0.832452 ==> few true single voxel detections
++ Smallest FDR q [25 2way_interaction t] = 0.00813095
++ Smallest FDR q [27 2way_interaction t] = 0.00293417
*+ WARNING: varying brick factors, writing NIfTI as float
In summary.Anova.mlm(object$Anova, multivariate = FALSE) :
HF eps > 1 treated as 1

Thank you for your great help.

Jeong
Subject Author Posted

3dMVM error message

drshrink January 16, 2017 12:32AM

Re: 3dMVM error message

gang January 17, 2017 08:29AM

Re: 3dMVM error message

drshrink January 18, 2017 07:38AM

Re: 3dMVM error message

gang January 18, 2017 04:03PM