AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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archerdb
January 25, 2017 11:18AM
Hello --

The output of the suggested command is below: 

-------------------------------- general ---------------------------------
architecture:         64bit ELF
system:               Linux
release:              4.4.0-53-generic
version:              #74-Ubuntu SMP Fri Dec 2 15:59:10 UTC 2016
distribution:         Ubuntu 16.04 xenial
number of CPUs:       32
apparent login shell: bash
shell RC file:        .bashrc (exists)

--------------------- AFNI and related program tests ---------------------
which afni           : /home/mcuser/abin/afni
afni version         : Precompiled binary linux_openmp_64: Nov 23 2016 
AFNI_version.txt     : AFNI_16.3.13, linux_openmp_64, Nov 23 2016
which python         : /usr/bin/python
python version       : 2.7.12
which R              : /usr/bin/R
R version            : R version 3.3.2 (2016-10-31) -- "Sincere Pumpkin Patch"
which tcsh           : /usr/bin/tcsh

instances of various programs found in PATH:
    afni   : 1   (/home/mcuser/abin/afni)
    R      : 1   (/usr/bin/R)
    python : 1   (/usr/bin/python2.7)

testing ability to start various programs...
    afni                 : success
    suma                 : success
    3dSkullStrip         : success
    uber_subject.py      : success
    3dAllineate          : success
    3dRSFC               : success
    SurfMesh             : success

checking for R packages...
    rPkgsInstall -pkgs ALL -check : success

checking for $HOME files...
    .afnirc                   : missing
    .sumarc                   : missing
    .afni/help/all_progs.COMP : found

------------------------------ python libs -------------------------------
++ module 'PyQt4' found at /usr/lib/python2.7/dist-packages/PyQt4
++ module loaded: PyQt4

-------------------------------- env vars --------------------------------
PATH = /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/home/mcuser/abin:/usr/lib/fsl/5.0

PYTHONPATH = 
R_LIBS = /home/mcuser/R

LD_LIBRARY_PATH = /usr/lib/fsl/5.0:/usr/local/lib/

DYLD_LIBRARY_PATH = 
DYLD_FALLBACK_LIBRARY_PATH = 

------------------------------ data checks -------------------------------
data dir : missing AFNI_data6
data dir : missing suma_demo
data dir : missing FATCAT_DEMO
data dir : missing afni_handouts
atlas    : found TT_N27+tlrc  under /home/mcuser/abin

------------------------------ OS specific -------------------------------
which apt-get        : /usr/bin/apt-get
apt-get version      : apt 1.2.15 (amd64)

have Ubuntu system: Ubuntu 16.04 xenial

============================ summary comments ============================
*  login shell 'bash', trusting user to translate from 'tcsh'
*  shell bash: consider sourcing (non-login) .bashrc from (login) .profile
*  consider running: cp /home/mcuser/abin/AFNI.afnirc ~/.afnirc
*  consider running "suma -update_env" for .sumarc
*  insufficient data for AFNI bootcamp
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Subject Author Posted

AFNI crashing when using whereami

archerdb January 25, 2017 09:58AM

Re: AFNI crashing when using whereami

Bob Cox January 25, 2017 10:16AM

Re: AFNI crashing when using whereami

archerdb January 25, 2017 11:18AM

Re: AFNI crashing when using whereami

rick reynolds January 25, 2017 11:31AM

Re: AFNI crashing when using whereami

Daniel Glen January 25, 2017 04:05PM

Re: AFNI crashing when using whereami

archerdb January 30, 2017 10:12AM

Re: AFNI crashing when using whereami

Daniel Glen January 30, 2017 06:01PM

Re: AFNI crashing when using whereami

Juan January 31, 2017 01:09PM

Re: AFNI crashing when using whereami

Daniel Glen January 31, 2017 02:40PM

Re: AFNI crashing when using whereami

Juan January 31, 2017 11:48PM

Re: AFNI crashing when using whereami

archerdb January 30, 2017 10:08AM