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Junyeon

August 27, 2018 06:26PM

Registered: 6 years ago
Posts: 38

Dear AFNI experts,

I encountered the following error during resting state analysis (example 11) when their proc scripts reached 3dpc.

3dpc -mask follow_ROI_FSvent+tlrc -pcsave 3 -prefix rm.ROIPC.FSvent rm.det_pcin_rall+tlrc
++ 3dpc: AFNI version=AFNI_17.1.10 (Jun 6 2017) [64-bit]
** ERROR: covariance diagonal (1,1) = 0
** ERROR: covariance diagonal (2,2) = 0
** ERROR: covariance diagonal (3,3) = 0
** ERROR: covariance diagonal (4,4) = 0
** ERROR: covariance diagonal (5,5) = 0
** ERROR: covariance diagonal (6,6) = 0
** ERROR: covariance diagonal (7,7) = 0
** ERROR: covariance diagonal (8,8) = 0
** ERROR: covariance diagonal (9,9) = 0
** ERROR: covariance diagonal (10,10) = 0
** ERROR: covariance diagonal (11,11) = 0
** ERROR: covariance diagonal (12,12) = 0
** ERROR: covariance diagonal (13,13) = 0
** ERROR: covariance diagonal (14,14) = 0
** ERROR: covariance diagonal (15,15) = 0
** ERROR: covariance diagonal (16,16) = 0
** ERROR: covariance diagonal (17,17) = 0
** ERROR: covariance diagonal (18,18) = 0
** ERROR: covariance diagonal (19,19) = 0
** ERROR: covariance diagonal (20,20) = 0
** ERROR: covariance diagonal (21,21) = 0
** ERROR: covariance diagonal (22,22) = 0
** ERROR: covariance diagonal (23,23) = 0
** ERROR: covariance diagonal (24,24) = 0
** ERROR: covariance diagonal (25,25) = 0
** ERROR: covariance diagonal (26,26) = 0
** ERROR: covariance diagonal (27,27) = 0
** ERROR: covariance diagonal (28,28) = 0
** ERROR: covariance diagonal (29,29) = 0
** ERROR: covariance diagonal (30,30) = 0
** ERROR: covariance diagonal (31,31) = 0
** ERROR: covariance diagonal (32,32) = 0
** ERROR: covariance diagonal (33,33) = 0
** ERROR: covariance diagonal (34,34) = 0
** ERROR: covariance diagonal (35,35) = 0
** ERROR: covariance diagonal (36,36) = 0
** ERROR: covariance diagonal (37,37) = 0
** ERROR: covariance diagonal (38,38) = 0
** ERROR: covariance diagonal (39,39) = 0
** ERROR: covariance diagonal (40,40) = 0
** ERROR: covariance diagonal (41,41) = 0
** ERROR: covariance diagonal (42,42) = 0
** ERROR: covariance diagonal (43,43) = 0
** ERROR: covariance diagonal (44,44) = 0
** ERROR: covariance diagonal (45,45) = 0
** ERROR: covariance diagonal (46,46) = 0
** ERROR: covariance diagonal (47,47) = 0
** ERROR: covariance diagonal (48,48) = 0
** ERROR: covariance diagonal (49,49) = 0
** ERROR: covariance diagonal (50,50) = 0
** ERROR: covariance diagonal (51,51) = 0
** ERROR: covariance diagonal (52,52) = 0
** ERROR: covariance diagonal (53,53) = 0
** ERROR: covariance diagonal (54,54) = 0
** ERROR: covariance diagonal (55,55) = 0
** ERROR: covariance diagonal (56,56) = 0
** ERROR: covariance diagonal (57,57) = 0
** ERROR: covariance diagonal (58,58) = 0
** ERROR: covariance diagonal (59,59) = 0
** ERROR: covariance diagonal (60,60) = 0
** ERROR: covariance diagonal (61,61) = 0
** ERROR: covariance diagonal (62,62) = 0
** ERROR: covariance diagonal (63,63) = 0
** ERROR: covariance diagonal (64,64) = 0
** ERROR: covariance diagonal (65,65) = 0
** ERROR: covariance diagonal (66,66) = 0
** ERROR: covariance diagonal (67,67) = 0
** ERROR: covariance diagonal (68,68) = 0
** ERROR: covariance diagonal (69,69) = 0
** ERROR: covariance diagonal (70,70) = 0
** ERROR: covariance diagonal (71,71) = 0
** ERROR: covariance diagonal (72,72) = 0
** ERROR: covariance diagonal (73,73) = 0
** ERROR: covariance diagonal (74,74) = 0
** ERROR: covariance diagonal (75,75) = 0
** ERROR: covariance diagonal (76,76) = 0
** ERROR: covariance diagonal (77,77) = 0
** ERROR: covariance diagonal (78,78) = 0
** ERROR: covariance diagonal (79,79) = 0
** ERROR: covariance diagonal (80,80) = 0
** ERROR: covariance diagonal (81,81) = 0
** ERROR: covariance diagonal (82,82) = 0
** ERROR: covariance diagonal (83,83) = 0
** ERROR: covariance diagonal (84,84) = 0
** ERROR: covariance diagonal (85,85) = 0
** ERROR: covariance diagonal (86,86) = 0
** ERROR: covariance diagonal (87,87) = 0
** ERROR: covariance diagonal (88,88) = 0
** ERROR: covariance diagonal (89,89) = 0
** ERROR: covariance diagonal (90,90) = 0
** ERROR: covariance diagonal (91,91) = 0
** ERROR: covariance diagonal (92,92) = 0
** ERROR: covariance diagonal (93,93) = 0
** ERROR: covariance diagonal (94,94) = 0
** ERROR: covariance diagonal (95,95) = 0
** ERROR: covariance diagonal (96,96) = 0
** ERROR: covariance diagonal (97,97) = 0
** ERROR: covariance diagonal (98,98) = 0
** ERROR: covariance diagonal (99,99) = 0
** ERROR: covariance diagonal (100,100) = 0
** ERROR: covariance diagonal (101,101) = 0
** ERROR: covariance diagonal (102,102) = 0
** ERROR: covariance diagonal (103,103) = 0
** ERROR: covariance diagonal (104,104) = 0
** ERROR: covariance diagonal (105,105) = 0
** ERROR: covariance diagonal (106,106) = 0
** ERROR: covariance diagonal (107,107) = 0
** ERROR: covariance diagonal (108,108) = 0
** ERROR: covariance diagonal (109,109) = 0
** ERROR: covariance diagonal (110,110) = 0
** ERROR: covariance diagonal (111,111) = 0
** ERROR: covariance diagonal (112,112) = 0
** ERROR: covariance diagonal (113,113) = 0
** ERROR: covariance diagonal (114,114) = 0
** ERROR: covariance diagonal (115,115) = 0
** ERROR: covariance diagonal (116,116) = 0
** ERROR: covariance diagonal (117,117) = 0
** ERROR: covariance diagonal (118,118) = 0
** ERROR: covariance diagonal (119,119) = 0
** ERROR: covariance diagonal (120,120) = 0
** ERROR: covariance diagonal (121,121) = 0
** ERROR: covariance diagonal (122,122) = 0
** ERROR: covariance diagonal (123,123) = 0
** ERROR: covariance diagonal (124,124) = 0
** ERROR: covariance diagonal (125,125) = 0
** ERROR: covariance diagonal (126,126) = 0
** ERROR: covariance diagonal (127,127) = 0
** ERROR: covariance diagonal (128,128) = 0
** ERROR: covariance diagonal (129,129) = 0
** ERROR: covariance diagonal (130,130) = 0
** ERROR: covariance diagonal (131,131) = 0
** ERROR: covariance diagonal (132,132) = 0
** ERROR: covariance diagonal (133,133) = 0
** ERROR: covariance diagonal (134,134) = 0
** ERROR: covariance diagonal (135,135) = 0
** ERROR: covariance diagonal (136,136) = 0
** ERROR: covariance diagonal (137,137) = 0
** ERROR: covariance diagonal (138,138) = 0
** ERROR: covariance diagonal (139,139) = 0
** ERROR: covariance diagonal (140,140) = 0
** ERROR: covariance diagonal (141,141) = 0
** ERROR: covariance diagonal (142,142) = 0
** ERROR: covariance diagonal (143,143) = 0
** ERROR: covariance diagonal (144,144) = 0
** ERROR: covariance diagonal (145,145) = 0
** ERROR: covariance diagonal (146,146) = 0
** ERROR: covariance diagonal (147,147) = 0
** ERROR: covariance diagonal (148,148) = 0
** ERROR: covariance diagonal (149,149) = 0
** ERROR: covariance diagonal (150,150) = 0
** ERROR: covariance diagonal (151,151) = 0
** ERROR: covariance diagonal (152,152) = 0
** ERROR: covariance diagonal (153,153) = 0
** ERROR: covariance diagonal (154,154) = 0
** ERROR: covariance diagonal (155,155) = 0
** ERROR: covariance diagonal (156,156) = 0
** ERROR: covariance diagonal (157,157) = 0
** ERROR: covariance diagonal (158,158) = 0
** ERROR: covariance diagonal (159,159) = 0
** ERROR: covariance diagonal (160,160) = 0
** ERROR: covariance diagonal (161,161) = 0
** ERROR: covariance diagonal (162,162) = 0
** ERROR: covariance diagonal (163,163) = 0
** ERROR: covariance diagonal (164,164) = 0
** ERROR: covariance diagonal (165,165) = 0
** ERROR: covariance diagonal (166,166) = 0
** ERROR: covariance diagonal (167,167) = 0
** ERROR: covariance diagonal (168,168) = 0
** ERROR: covariance diagonal (169,169) = 0
** ERROR: covariance diagonal (170,170) = 0
** ERROR: covariance diagonal (171,171) = 0
** ERROR: covariance diagonal (172,172) = 0
** ERROR: covariance diagonal (173,173) = 0
** ERROR: covariance diagonal (174,174) = 0
** ERROR: covariance diagonal (175,175) = 0
** ERROR: covariance diagonal (176,176) = 0
** ERROR: covariance diagonal (177,177) = 0
** ERROR: covariance diagonal (178,178) = 0
** ERROR: covariance diagonal (179,179) = 0
** ERROR: covariance diagonal (180,180) = 0
** ERROR: covariance diagonal (181,181) = 0
** ERROR: covariance diagonal (182,182) = 0
** ERROR: covariance diagonal (183,183) = 0
** ERROR: covariance diagonal (184,184) = 0
** ERROR: covariance diagonal (185,185) = 0
** ERROR: covariance diagonal (186,186) = 0
** ERROR: covariance diagonal (187,187) = 0
** ERROR: covariance diagonal (188,188) = 0
** ERROR: covariance diagonal (189,189) = 0
** ERROR: covariance diagonal (190,190) = 0
** ERROR: covariance diagonal (191,191) = 0
** ERROR: covariance diagonal (192,192) = 0
** ERROR: covariance diagonal (193,193) = 0
** ERROR: covariance diagonal (194,194) = 0
** ERROR: covariance diagonal (195,195) = 0
** ERROR: covariance diagonal (196,196) = 0
** ERROR: covariance diagonal (197,197) = 0
** ERROR: covariance diagonal (198,198) = 0
** ERROR: covariance diagonal (199,199) = 0
** ERROR: covariance diagonal (200,200) = 0
** ERROR: covariance diagonal (201,201) = 0
** ERROR: covariance diagonal (202,202) = 0
** ERROR: covariance diagonal (203,203) = 0
** ERROR: covariance diagonal (204,204) = 0
** ERROR: covariance diagonal (205,205) = 0
** ERROR: covariance diagonal (206,206) = 0
** ERROR: covariance diagonal (207,207) = 0
** ERROR: covariance diagonal (208,208) = 0
** ERROR: covariance diagonal (209,209) = 0
** ERROR: covariance diagonal (210,210) = 0
** ERROR: covariance diagonal (211,211) = 0
** ERROR: covariance diagonal (212,212) = 0
** ERROR: covariance diagonal (213,213) = 0
** ERROR: covariance diagonal (214,214) = 0
** ERROR: covariance diagonal (215,215) = 0
** ERROR: covariance diagonal (216,216) = 0
** ERROR: covariance diagonal (217,217) = 0
** ERROR: covariance diagonal (218,218) = 0
** ERROR: covariance diagonal (219,219) = 0
** ERROR: covariance diagonal (220,220) = 0
** ERROR: covariance diagonal (221,221) = 0
** ERROR: covariance diagonal (222,222) = 0
** ERROR: covariance diagonal (223,223) = 0
** ERROR: covariance diagonal (224,224) = 0
** ERROR: covariance diagonal (225,225) = 0
** ERROR: covariance diagonal (226,226) = 0
** ERROR: covariance diagonal (227,227) = 0
** ERROR: covariance diagonal (228,228) = 0
** ERROR: covariance diagonal (229,229) = 0
** ERROR: covariance diagonal (230,230) = 0
** ERROR: covariance diagonal (231,231) = 0
** ERROR: covariance diagonal (232,232) = 0
** ERROR: covariance diagonal (233,233) = 0
** ERROR: covariance diagonal (234,234) = 0
** ERROR: covariance diagonal (235,235) = 0
** ERROR: covariance diagonal (236,236) = 0
** ERROR: covariance diagonal (237,237) = 0
** FATAL ERROR: *** program exiting right here and now!
** Program compile date = Jun 6 2017

When running 3dmaskave -mask follow_ROI_FSvent+tlrc rm.det_pcin_rall+tlrc, I got the following.

++ 3dmaskave: AFNI version=AFNI_17.1.10 (Jun 6 2017) [64-bit]
+++ 1132 voxels survive the mask
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
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0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
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0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
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0 [1132 voxels]
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0 [1132 voxels]
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0 [1132 voxels]
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0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
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0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
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0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
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0 [1132 voxels]
0 [1132 voxels]
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0 [1132 voxels]
0 [1132 voxels]
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0 [1132 voxels]
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0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]
0 [1132 voxels]

Also, when checking anat and epi registration, epi image was not aligned to anat image. Could you please suggest how to solve this?

Thank you in advance for your help,
Jun

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Subject	Author	Posted
Resting State Proc 3dpc Error	Junyeon	August 27, 2018 06:26PM
Re: Resting State Proc 3dpc Error	rick reynolds	September 07, 2018 02:19PM
Re: Resting State Proc 3dpc Error	JW	September 07, 2018 06:21PM
Re: Resting State Proc 3dpc Error	rick reynolds	September 08, 2018 09:11AM
Re: Resting State Proc 3dpc Error	JW	September 10, 2018 04:39PM
Re: Resting State Proc 3dpc Error	rick reynolds	September 12, 2018 12:25PM
Re: Resting State Proc 3dpc Error	JW	September 12, 2018 05:04PM
Re: Resting State Proc 3dpc Error	JW	September 16, 2018 12:26PM
Re: Resting State Proc 3dpc Error	rick reynolds	September 17, 2018 09:00AM