AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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chirag90in
October 09, 2018 12:04PM
AFNI Experts,

I am carrying out "denoising" (using ICA AROMA) separately on each run of the functional dataset. This denoising produces several components (timeseires) which represent noise for that particular run. I want to include these timeseires as confounds in my 3dDeconvolve model. However, since each run may have different number of confound timeseries, I cannot put them in one single text file with the -ortvec option.

My question is: I there a way to provide multiple confound text files (one for each run) with the -ortvec (or any other) option?

Thank you,
Chirag



Edited 1 time(s). Last edit at 10/09/2018 12:07PM by chirag90in.
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Subject Author Posted

multiple files for -ortvec option

chirag90in October 09, 2018 12:04PM

Re: multiple files for -ortvec option

rick reynolds October 09, 2018 04:52PM

Re: multiple files for -ortvec option

chirag90in October 10, 2018 12:45PM