AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Mpark
August 09, 2017 02:51AM
Hi all,

I'm trying to run @SUMA_Make_Spec_FS after processing with Freesurfer.
But when I ran the command, error message poped up like 'failure: could not create surface lh.smoothwm.asc'.
I already made csrutil enabled but the problem happened.
Also, in the reply for latest post relevant to my issue, Daniel recommended fs_update (sudo -E fs_update) and then sourcing the freesurfer.
I did it but the same error still happened.

My mac OS is OS X El Capitan 10.11.3.
Any advise will be helpful to me. Thank you very much!


Below is terminal message:

----------------------------------------
++ creating directory './SUMA' for results...
-- found 8 LH surfaces
-- found 8 RH surfaces

Notice: Found COR files and mri/orig.mgz
******** Will use COR files.

++ to3d: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
++ It is best to use to3d via the Dimon program.
++ Counting images: total=256 2D slices
++ Each 2D slice is 256 X 256 pixels
++ Image data type = byte
++ Reading images: ....................................
++ 3D dataset written to disk
++ created AFNI file './SUMA/sbj1_SurfVol+orig.HEAD'
++ created AFNI file './SUMA/sbj1_SurfVol+orig.BRIK'
Made roi label table for AFNI - fs_table.niml.lt
mri_convert.bin -ot nii mri/T1.mgz /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/T1.nii
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from mri/T1.mgz...
TR=2300.00, TE=2.28, TI=900.00, flip angle=8.00
i_ras = (-1, 1.49012e-08, 1.86265e-09)
j_ras = (0, 2.32831e-10, -1)
k_ras = (0, 1, 0)
writing to /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/T1.nii...
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset ./T1.nii
+ loading and re-writing dataset ./T1.nii (./T1.nii in NIFTI storage)
++ 3drefit processed 1 datasets
mri_convert.bin -ot nii mri/aparc+aseg.mgz /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/aparc+aseg.nii
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from mri/aparc+aseg.mgz...
TR=2300.00, TE=2.28, TI=900.00, flip angle=8.00
i_ras = (-1, 1.49012e-08, 1.86265e-09)
j_ras = (0, 2.32831e-10, -1)
k_ras = (0, 1, 0)
writing to /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/aparc+aseg.nii...
** AFNI converts NIFTI_datatype=8 (INT32) in file ./aparc+aseg.nii to FLOAT32
Warnings of this type will be muted for this session.
Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
** AFNI converts NIFTI_datatype=8 (INT32) in file ./aparc+aseg.nii to FLOAT32
Warnings of this type will be muted for this session.
Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
++ Processing AFNI dataset ./aparc+aseg.nii
+ loading and re-writing dataset ./aparc+aseg.nii (./aparc+aseg.nii in NIFTI storage)
++ 3drefit processed 1 datasets
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset aparc+aseg.nii
+ loading and re-writing dataset aparc+aseg.nii (./aparc+aseg.nii in NIFTI storage)
++ 3drefit processed 1 datasets
Program 3dmerge
++ 3dmerge: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
3dmerge: edit and combine 3D datasets, by RW Cox
++ default -1dindex = 0
++ default -1tindex = 1
++ editing input dataset in memory (64.0 MB)
.
-- Wrote edited dataset: ./aparc+aseg_rank.nii
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset aparc+aseg_rank.nii
+ loading and re-writing dataset aparc+aseg_rank.nii (./aparc+aseg_rank.nii in NIFTI storage)
++ 3drefit processed 1 datasets

Notice: SessionAtlases.niml already exists, appending to it aparc+aseg_rank.
mri_convert.bin -ot nii mri/aparc.a2009s+aseg.mgz /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/aparc.a2009s+aseg.nii
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from mri/aparc.a2009s+aseg.mgz...
TR=2300.00, TE=2.28, TI=900.00, flip angle=8.00
i_ras = (-1, 1.49012e-08, 1.86265e-09)
j_ras = (0, 2.32831e-10, -1)
k_ras = (0, 1, 0)
writing to /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/aparc.a2009s+aseg.nii...
** AFNI converts NIFTI_datatype=8 (INT32) in file ./aparc.a2009s+aseg.nii to FLOAT32
Warnings of this type will be muted for this session.
Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
** AFNI converts NIFTI_datatype=8 (INT32) in file ./aparc.a2009s+aseg.nii to FLOAT32
Warnings of this type will be muted for this session.
Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
++ Processing AFNI dataset ./aparc.a2009s+aseg.nii
+ loading and re-writing dataset ./aparc.a2009s+aseg.nii (./aparc.a2009s+aseg.nii in NIFTI storage)
++ 3drefit processed 1 datasets
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset aparc.a2009s+aseg.nii
+ loading and re-writing dataset aparc.a2009s+aseg.nii (./aparc.a2009s+aseg.nii in NIFTI storage)
++ 3drefit processed 1 datasets

Notice: SessionAtlases.niml already exists, appending to it aparc.a2009s+aseg.
Program 3dmerge
++ 3dmerge: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
3dmerge: edit and combine 3D datasets, by RW Cox
++ default -1dindex = 0
++ default -1tindex = 1
++ editing input dataset in memory (64.0 MB)
.
-- Wrote edited dataset: ./aparc.a2009s+aseg_rank.nii
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset aparc.a2009s+aseg_rank.nii
+ loading and re-writing dataset aparc.a2009s+aseg_rank.nii (./aparc.a2009s+aseg_rank.nii in NIFTI storage)
++ 3drefit processed 1 datasets

Notice: SessionAtlases.niml already exists, appending to it aparc.a2009s+aseg_rank.
mri_convert.bin -ot nii mri/aseg.auto.mgz /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/aseg.auto.nii
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from mri/aseg.auto.mgz...
TR=2300.00, TE=2.28, TI=900.00, flip angle=8.00
i_ras = (-1, 1.49012e-08, 1.86265e-09)
j_ras = (0, 2.32831e-10, -1)
k_ras = (0, 1, 0)
writing to /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/aseg.auto.nii...
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset ./aseg.auto.nii
+ loading and re-writing dataset ./aseg.auto.nii (./aseg.auto.nii in NIFTI storage)
++ 3drefit processed 1 datasets
mri_convert.bin -ot nii mri/aseg.mgz /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/aseg.nii
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from mri/aseg.mgz...
TR=2300.00, TE=2.28, TI=900.00, flip angle=8.00
i_ras = (-1, 1.49012e-08, 1.86265e-09)
j_ras = (0, 2.32831e-10, -1)
k_ras = (0, 1, 0)
writing to /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/aseg.nii...
** AFNI converts NIFTI_datatype=8 (INT32) in file ./aseg.nii to FLOAT32
Warnings of this type will be muted for this session.
Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
** AFNI converts NIFTI_datatype=8 (INT32) in file ./aseg.nii to FLOAT32
Warnings of this type will be muted for this session.
Set AFNI_NIFTI_TYPE_WARN to YES to see them all, NO to see none.
++ Processing AFNI dataset ./aseg.nii
+ loading and re-writing dataset ./aseg.nii (./aseg.nii in NIFTI storage)
++ 3drefit processed 1 datasets
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset aseg.nii
+ loading and re-writing dataset aseg.nii (./aseg.nii in NIFTI storage)
++ 3drefit processed 1 datasets

Notice: SessionAtlases.niml already exists, appending to it aseg.
Program 3dmerge
++ 3dmerge: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
3dmerge: edit and combine 3D datasets, by RW Cox
++ default -1dindex = 0
++ default -1tindex = 1
++ editing input dataset in memory (64.0 MB)
.
-- Wrote edited dataset: ./aseg_rank.nii
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset aseg_rank.nii
+ loading and re-writing dataset aseg_rank.nii (./aseg_rank.nii in NIFTI storage)
++ 3drefit processed 1 datasets

Notice: SessionAtlases.niml already exists, appending to it aseg_rank.
mri_convert.bin -ot nii mri/brain.finalsurfs.mgz /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/brain.finalsurfs.nii
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from mri/brain.finalsurfs.mgz...
TR=2300.00, TE=2.28, TI=900.00, flip angle=8.00
i_ras = (-1, 1.49012e-08, 1.86265e-09)
j_ras = (0, 2.32831e-10, -1)
k_ras = (0, 1, 0)
writing to /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/brain.finalsurfs.nii...
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset ./brain.finalsurfs.nii
+ loading and re-writing dataset ./brain.finalsurfs.nii (./brain.finalsurfs.nii in NIFTI storage)
++ 3drefit processed 1 datasets
mri_convert.bin -ot nii mri/brain.mgz /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/brain.nii
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from mri/brain.mgz...
TR=2300.00, TE=2.28, TI=900.00, flip angle=8.00
i_ras = (-1, 1.49012e-08, 1.86265e-09)
j_ras = (0, 2.32831e-10, -1)
k_ras = (0, 1, 0)
writing to /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/brain.nii...
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset ./brain.nii
+ loading and re-writing dataset ./brain.nii (./brain.nii in NIFTI storage)
++ 3drefit processed 1 datasets
mri_convert.bin -ot nii mri/brainmask.auto.mgz /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/brainmask.auto.nii
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from mri/brainmask.auto.mgz...
TR=2300.00, TE=2.28, TI=900.00, flip angle=8.00
i_ras = (-1, 1.49012e-08, 1.86265e-09)
j_ras = (0, 2.32831e-10, -1)
k_ras = (0, 1, 0)
writing to /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/brainmask.auto.nii...
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset ./brainmask.auto.nii
+ loading and re-writing dataset ./brainmask.auto.nii (./brainmask.auto.nii in NIFTI storage)
++ 3drefit processed 1 datasets
mri_convert.bin -ot nii mri/brainmask.mgz /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/brainmask.nii
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from mri/brainmask.mgz...
TR=2300.00, TE=2.28, TI=900.00, flip angle=8.00
i_ras = (-1, 1.49012e-08, 1.86265e-09)
j_ras = (0, 2.32831e-10, -1)
k_ras = (0, 1, 0)
writing to /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/brainmask.nii...
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset ./brainmask.nii
+ loading and re-writing dataset ./brainmask.nii (./brainmask.nii in NIFTI storage)
++ 3drefit processed 1 datasets
mri_convert.bin -ot nii mri/norm.mgz /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/norm.nii
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from mri/norm.mgz...
TR=2300.00, TE=2.28, TI=900.00, flip angle=8.00
i_ras = (-1, 1.49012e-08, 1.86265e-09)
j_ras = (0, 2.32831e-10, -1)
k_ras = (0, 1, 0)
writing to /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/norm.nii...
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset ./norm.nii
+ loading and re-writing dataset ./norm.nii (./norm.nii in NIFTI storage)
++ 3drefit processed 1 datasets
mri_convert.bin -ot nii mri/nu.mgz /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/nu.nii
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from mri/nu.mgz...
TR=2300.00, TE=2.28, TI=900.00, flip angle=8.00
i_ras = (-1, 1.49012e-08, 1.86265e-09)
j_ras = (0, 2.32831e-10, -1)
k_ras = (0, 1, 0)
writing to /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/nu.nii...
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset ./nu.nii
+ loading and re-writing dataset ./nu.nii (./nu.nii in NIFTI storage)
++ 3drefit processed 1 datasets
mri_convert.bin -ot nii mri/lh.ribbon.mgz /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/lh.ribbon.nii
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from mri/lh.ribbon.mgz...
TR=2300.00, TE=2.28, TI=900.00, flip angle=8.00
i_ras = (-1, 1.49012e-08, 1.86265e-09)
j_ras = (0, 2.32831e-10, -1)
k_ras = (0, 1, 0)
writing to /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/lh.ribbon.nii...
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset ./lh.ribbon.nii
+ loading and re-writing dataset ./lh.ribbon.nii (./lh.ribbon.nii in NIFTI storage)
++ 3drefit processed 1 datasets
mri_convert.bin -ot nii mri/rh.ribbon.mgz /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/rh.ribbon.nii
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from mri/rh.ribbon.mgz...
TR=2300.00, TE=2.28, TI=900.00, flip angle=8.00
i_ras = (-1, 1.49012e-08, 1.86265e-09)
j_ras = (0, 2.32831e-10, -1)
k_ras = (0, 1, 0)
writing to /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/rh.ribbon.nii...
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset ./rh.ribbon.nii
+ loading and re-writing dataset ./rh.ribbon.nii (./rh.ribbon.nii in NIFTI storage)
++ 3drefit processed 1 datasets
mri_convert.bin -ot nii mri/wm.asegedit.mgz /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/wm.asegedit.nii
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from mri/wm.asegedit.mgz...
TR=2300.00, TE=2.28, TI=900.00, flip angle=8.00
i_ras = (-1, 1.49012e-08, 1.86265e-09)
j_ras = (0, 2.32831e-10, -1)
k_ras = (0, 1, 0)
writing to /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/wm.asegedit.nii...
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset ./wm.asegedit.nii
+ loading and re-writing dataset ./wm.asegedit.nii (./wm.asegedit.nii in NIFTI storage)
++ 3drefit processed 1 datasets
mri_convert.bin -ot nii mri/wm.mgz /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/wm.nii
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from mri/wm.mgz...
TR=2300.00, TE=2.28, TI=900.00, flip angle=8.00
i_ras = (-1, 1.49012e-08, 1.86265e-09)
j_ras = (0, 2.32831e-10, -1)
k_ras = (0, 1, 0)
writing to /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/wm.nii...
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset ./wm.nii
+ loading and re-writing dataset ./wm.nii (./wm.nii in NIFTI storage)
++ 3drefit processed 1 datasets
mri_convert.bin -ot nii mri/wm.seg.mgz /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/wm.seg.nii
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from mri/wm.seg.mgz...
TR=2300.00, TE=2.28, TI=900.00, flip angle=8.00
i_ras = (-1, 1.49012e-08, 1.86265e-09)
j_ras = (0, 2.32831e-10, -1)
k_ras = (0, 1, 0)
writing to /Users/minsunpark/Desktop/MAE_fMRI/data_sbj/1_LHS/T1_MPRAGE_SAG_1_0ISO_0017/lhs/./SUMA/wm.seg.nii...
++ 3drefit: AFNI version=AFNI_17.2.00 (Jul 5 2017) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset ./wm.seg.nii
+ loading and re-writing dataset ./wm.seg.nii (./wm.seg.nii in NIFTI storage)
++ 3drefit processed 1 datasets
-- running 'mris_convert lh.smoothwm lh.smoothwm.asc'
Trace/BPT trap
dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib

failure: could not create surface lh.smoothwm.asc

--> is your FreeSurfer license installed?
program failure: exiting...
---------------------------------------------------------------------



Edited 3 time(s). Last edit at 08/09/2017 03:15AM by vd.mpark.
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Failure with @SUMA_Make_Spec_FS

Mpark August 09, 2017 02:51AM

Re: Failure with @SUMA_Make_Spec_FS

ptaylor August 09, 2017 08:16AM

Re: Failure with @SUMA_Make_Spec_FS

Daniel Glen August 09, 2017 12:07PM

Re: Failure with @SUMA_Make_Spec_FS

Mpark August 11, 2017 02:34AM

Re: Failure with @SUMA_Make_Spec_FS

Mpark August 11, 2017 02:29AM

Re: Failure with @SUMA_Make_Spec_FS

ptaylor August 11, 2017 08:08AM

Re: Failure with @SUMA_Make_Spec_FS

Mpark August 12, 2017 03:39AM

Re: Failure with @SUMA_Make_Spec_FS

ptaylor August 12, 2017 11:45PM

Re: Failure with @SUMA_Make_Spec_FS

Mpark August 13, 2017 01:58AM

Re: Failure with @SUMA_Make_Spec_FS

ptaylor August 13, 2017 10:24PM

Re: Failure with @SUMA_Make_Spec_FS

ccunningham May 23, 2018 03:23PM

Re: Failure with @SUMA_Make_Spec_FS

ptaylor May 23, 2018 04:14PM

Re: Failure with @SUMA_Make_Spec_FS

ccunningham May 24, 2018 09:38AM

Re: Failure with @SUMA_Make_Spec_FS

rick reynolds May 24, 2018 10:11AM

Re: Failure with @SUMA_Make_Spec_FS

ptaylor May 24, 2018 11:01AM