AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 15, 2017 12:49PM
Hi Chintan,

Such a linear regression can be done with either 3dttest++
or 3dDeconvolve (with demeaned covariates). Using 3dttest++,
the input datasets should be separate, as in there should be
200 datasets (see 3dTsplit4D to separate a dataset). And the
covariate file entries would need to be tied to each of those
datasets, preferably by a subject ID.

Using 3dDeconvolve, the input should be a single dataset,
and the covariates (regressors) should all have zero mean
(or whatever center is appropriate).

Since this is a group analysis, 3dttest++ would be a more
typical way to run the regression. However, it looks like
you have set it up such that 3dDeconvolve would be easier.
In your place, I might be inclined to set it up for 3dttest++.

- rick
Subject Author Posted

GLM over volume of surfaces

cmehta November 14, 2017 03:55PM

Re: GLM over volume of surfaces

rick reynolds November 15, 2017 12:49PM

Re: GLM over volume of surfaces

cmehta November 21, 2017 07:21AM