AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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bjaso
December 06, 2017 06:04PM
Hello,
I recently ran afni_proc.py to pre-process my data. Because I wanted to run ICA-fix, I used the pb02 image output for those analyses. Then, I wanted to regress out motion and bandpass the ICA-fixed data (the image that I used as the input). In order to do this, I decided to run 3dTproject. Is this the appropriate step for me to take? Below is the 3dTproject command I used:

3dTproject -polort 1 –input /$BaseDirHC/${i}/${i}.feat/filtered_func_data_clean.nii.gz \
-censor /$BaseDirHC/${i}/${i}.feat/SUBJ${i}.results/censor_SUBJ${i}_combined_2.1D -cenmode ZERO \
-ort /$BaseDirHC/${i}/${i}.feat/SUBJ${i}.results/X.nocensor.xmat.1D -prefix errts.subj${i}.tproject

Thank you!
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3dTproject question

bjaso December 06, 2017 06:04PM

Re: 3dTproject question

rick reynolds December 08, 2017 09:17AM