Hello,
I recently ran afni_proc.py to pre-process my data. Because I wanted to run ICA-fix, I used the pb02 image output for those analyses. Then, I wanted to regress out motion and bandpass the ICA-fixed data (the image that I used as the input). In order to do this, I decided to run 3dTproject. Is this the appropriate step for me to take? Below is the 3dTproject command I used:
3dTproject -polort 1 –input /$BaseDirHC/${i}/${i}.feat/filtered_func_data_clean.nii.gz \
-censor /$BaseDirHC/${i}/${i}.feat/SUBJ${i}.results/censor_SUBJ${i}_combined_2.1D -cenmode ZERO \
-ort /$BaseDirHC/${i}/${i}.feat/SUBJ${i}.results/X.nocensor.xmat.1D -prefix errts.subj${i}.tproject
Thank you!
