-------------------------------- general ---------------------------------
architecture:         64bit 
system:               Darwin
release:              17.2.0
version:              Darwin Kernel Version 17.2.0: Fri Sep 29 18:27:05 PDT 2017; root:xnu-4570.20.62~3/RELEASE_X86_64
distribution:         10.13.1 x86_64
number of CPUs:       4
apparent login shell: bash
shell RC file:        .bashrc (exists)

--------------------- AFNI and related program tests ---------------------
which afni           : /Users/xyz/abin/afni
afni version         : Precompiled binary macos_10.12_local: Nov 27 2017 
                     : AFNI_17.3.05
AFNI_version.txt     : AFNI_17.3.05, macos_10.12_local, Nov 27 2017
which python         : /usr/bin/python
python version       : 2.7.10
which R              : /usr/local/bin/R
R version            : R version 3.4.2 (2017-09-28) -- "Short Summer"
which tcsh           : /bin/tcsh

instances of various programs found in PATH:
    afni    : 1   (/Users/xyz/abin/afni)
    R       : 1   (/Library/Frameworks/R.framework/Versions/3.4/Resources/bin/R)
    python  : 1   (/usr/bin/python)
    python2 : 1   (/usr/local/Cellar/python/2.7.14/Frameworks/Python.framework/Versions/2.7/bin/python2.7)
    python3 : 1   (/usr/local/Cellar/python3/3.6.3/Frameworks/Python.framework/Versions/3.6/bin/python3.6)


testing ability to start various programs...
    afni                 : success
    suma                 : success
    3dSkullStrip         : success
    uber_subject.py      : success
    3dAllineate          : success
    3dRSFC               : success
    SurfMesh             : success
    3dClustSim           : success

checking for R packages...
    rPkgsInstall -pkgs ALL -check : FAILURE
        Error in dyn.load(ll) : 
          unable to load shared object '/Users/xyz/abin/R_io.so':
          dlopen(/Users/xyz/abin/R_io.so, 6): Library not loaded: /sw/lib/libXm.4.dylib
          Referenced from: /Users/xyz/abin/R_io.so
          Reason: image not found
        Calls: source ... withVisible -> eval -> eval -> set_R_io -> dyn.load
        Execution halted

checking for $HOME files...
    .afnirc                   : found
    .sumarc                   : found
    .afni/help/all_progs.COMP : found

------------------------------ python libs -------------------------------
** python module not found: PyQt4
-- PyQt4 is no longer needed for an AFNI bootcamp

-------------------------------- env vars --------------------------------
PATH = /usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Users/xyz/abin

PYTHONPATH = /usr/local/lib/python2.7/site-packages

R_LIBS = 
LD_LIBRARY_PATH = 
DYLD_LIBRARY_PATH (sub-shell) = /opt/X11/lib/flat_namespace
DYLD_FALLBACK_LIBRARY_PATH (sub-shell) = /Users/xyz/abin

------------------------------ data checks -------------------------------
data dir : found AFNI_data6   under $HOME/CD
           top history: ...PPI scripts are now based on FT_analysis/s05.ap.uber
data dir : found AFNI_demos   under $HOME/CD
           top history: ... [pault]: remove rank from FATCAT_DEMO, FAT_MVM_DEMO
data dir : found suma_demo    under $HOME/CD
           top history: .../SUMA_data/Build_tmp on Wed Aug 20 10:04:23 EDT 2014
data dir : found afni_handouts under $HOME/Documents/AFNI
atlas    : found TT_N27+tlrc  under /Users/xyz/abin

------------------------------ OS specific -------------------------------
which brew           : /usr/local/bin/brew
brew version         : Homebrew 1.3.9

-- for PyQt4 under brew, consider running:
   brew install cartr/qt4/pyqt
++ found valid link /usr/local/lib/libgomp.1.dylib
   to /usr/local/Cellar/gcc/7.2.0/lib/gcc/7/libgomp.1.dylib
++ found valid link /usr/local/lib/libglib-2.0.dylib
   to ../Cellar/glib/2.54.2/lib/libglib-2.0.dylib
++ found 1 dylib files under '/opt/X11/lib/flat_namespace'
   -- found 'libXt' dylib files:
      /opt/X11/lib/flat_namespace/libXt.6.dylib
-- recent OS X, cheating to check DYLD_LIBRARY_PATH in cur shell 'bash'...
++ found evar DYLD_LIBRARY_PATH = /opt/X11/lib/flat_namespace
-- recent OS X, cheating to check DYLD_LIBRARY_PATH in shell 'tcsh'...
++ found evar DYLD_LIBRARY_PATH = /opt/X11/lib/flat_namespace

=========================  summary, please fix:  =========================
*  login shell 'bash', trusting user to translate from 'tcsh'
*  shell bash: consider sourcing (non-login) .bashrc from (login) .bash_profile
*  missing R packages (see rPkgsInstall)