AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
February 21, 2018 06:52PM
Thank you very much for your help. When I run using a t-test I do get the same error message. Here is the output from running the system check:

-------------------------------- general ---------------------------------
architecture: 64bit
system: Darwin
release: 16.7.0
version: Darwin Kernel Version 16.7.0: Thu Jun 15 17:36:27 PDT 2017; root:xnu-3789.70.16~2/RELEASE_X86_64
distribution: 10.12.6 x86_64
number of CPUs: 8
apparent login shell: tcsh
shell RC file: .cshrc (exists)

--------------------- AFNI and related program tests ---------------------
which afni : /Users/User1/abin/afni
afni version : Precompiled binary macosx_10.7_local: Nov 21 2017
: AFNI_17.3.04
AFNI_version.txt : AFNI_17.3.04, macosx_10.7_local, Nov 21 2017
which python : /usr/bin/python
python version : 2.7.10
which R : /usr/local/bin/R
R version : R version 3.4.1 (2017-06-30) -- "Single Candle"
which tcsh : /bin/tcsh

instances of various programs found in PATH:
afni : 1 (/Users/User1/abin/afni)
R : 1 (/Library/Frameworks/R.framework/Versions/3.4/Resources/bin/R)
python : 1 (/usr/bin/python)
python2 : 0
python3 : 0


testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success
3dClustSim : success

checking for R packages...
rPkgsInstall -pkgs ALL -check : success

checking for $HOME files...
.afnirc : found
.sumarc : found
.afni/help/all_progs.COMP : found

------------------------------ python libs -------------------------------
** python module not found: PyQt4
-- PyQt4 is no longer needed for an AFNI bootcamp

python binaries under /sw/bin:
/sw/bin/python (sym link to /sw/bin/python2.7)

-------------------------------- env vars --------------------------------
PATH = /usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/Users/User1/abin

PYTHONPATH = /sw/lib/qt4-mac/lib/python2.7/site-packages

R_LIBS =
LD_LIBRARY_PATH =
DYLD_LIBRARY_PATH (sub-shell) = /opt/X11/lib/flat_namespace
DYLD_FALLBACK_LIBRARY_PATH (sub-shell) =

------------------------------ data checks -------------------------------
data dir : found AFNI_data6 under $HOME
top history: ... [rickr]: updated FT_white.nii w/out 16 (brain stem)
data dir : found AFNI_demos under $HOME
top history: ... [pault]: remove rank from FATCAT_DEMO, FAT_MVM_DEMO
data dir : found suma_demo under $HOME
top history: .../SUMA_data/Build_tmp on Wed Aug 20 10:04:23 EDT 2014
data dir : found afni_handouts under $HOME
atlas : found TT_N27+tlrc under /Users/User1/abin

------------------------------ OS specific -------------------------------

++ found 1 dylib files under '/opt/X11/lib/flat_namespace'
-- found 'libXt' dylib files:
/opt/X11/lib/flat_namespace/libXt.6.dylib
-- recent OS X, cheating to check DYLD_LIBRARY_PATH in cur shell 'tcsh'...
++ found evar DYLD_LIBRARY_PATH = /opt/X11/lib/flat_namespace

========================= summary, please fix: =========================
* consider installing fink
Subject Author Posted

3dLME for pre-post intervention design

AFNIbeginner February 21, 2018 03:24PM

Re: 3dLME for pre-post intervention design

gang February 21, 2018 05:56PM

Re: 3dLME for pre-post intervention design

AFNIbeginner February 21, 2018 06:52PM

Re: 3dLME for pre-post intervention design

gang February 22, 2018 11:51AM

Re: 3dLME for pre-post intervention design

AFNIbeginner February 22, 2018 03:21PM

Re: 3dLME for pre-post intervention design

gang February 22, 2018 03:50PM

Re: 3dLME for pre-post intervention design

AFNIbeginner February 27, 2018 03:07PM

Re: 3dLME for pre-post intervention design

gang February 28, 2018 03:32PM

Re: 3dLME for pre-post intervention design

AFNIbeginner March 01, 2018 03:48PM

Re: 3dLME for pre-post intervention design

gang March 02, 2018 09:07AM

Re: 3dLME for pre-post intervention design

AFNIbeginner March 05, 2018 01:24PM

Re: 3dLME for pre-post intervention design

AFNIbeginner March 07, 2018 02:16PM

Re: 3dLME for pre-post intervention design

gang March 08, 2018 01:18PM

Re: 3dLME for pre-post intervention design

AFNIbeginner March 12, 2018 08:05PM

Re: 3dLME for pre-post intervention design

gang March 13, 2018 05:39PM

Re: 3dLME for pre-post intervention design

AFNIbeginner March 14, 2018 12:08PM

Re: 3dLME for pre-post intervention design

AFNIbeginner April 06, 2018 12:18PM

Re: 3dLME for pre-post intervention design

gang April 06, 2018 04:17PM

Re: 3dLME for pre-post intervention design

AFNIbeginner April 06, 2018 06:30PM

Re: 3dLME for pre-post intervention design

gang April 09, 2018 09:36AM

Re: 3dLME for pre-post intervention design

AFNIbeginner April 09, 2018 01:17PM

Re: 3dLME for pre-post intervention design

AFNIbeginner April 14, 2018 08:48AM

Re: 3dLME for pre-post intervention design

gang April 16, 2018 09:57AM

Re: 3dLME for pre-post intervention design

AFNIbeginner April 16, 2018 12:00PM

Re: 3dLME for pre-post intervention design

gang April 16, 2018 03:39PM

Re: 3dLME for pre-post intervention design

AFNIbeginner April 16, 2018 04:21PM