AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
March 01, 2018 02:03PM
You should be able to use "whereami -show_atlases" to see all the available atlases and their corresponding template spaces. If you want all these to show up in the Draw Dataset plugin, set AFNI_ATLAS_LIST to ALL in your .afnirc file. The CA_N27_ML or CA_N27_MPM atlas may be what you want. The atlases with names ending in MNIA are not in MNI space, but in a variant of MNI called MNI_ANAT space with the (0,0,0) at the Anterior Commissure. You can also use a copy of an atlas, or extract a particular region with 3dcalc. If you have atlases available elsewhere, these can be merged into standard AFNI use by using the script @Atlasize. Let me know if you run into any problems.
Subject Author Posted

Draw ROI in afni using atlases

Zhang Yu March 01, 2018 04:54AM

Re: Draw ROI in afni using atlases

Daniel Glen March 01, 2018 02:03PM

Re: Draw ROI in afni using atlases

Zhang Yu March 01, 2018 03:40PM

Re: Draw ROI in afni using atlases

Daniel Glen March 01, 2018 04:44PM

Re: Draw ROI in afni using atlases

Zhang Yu March 02, 2018 03:10AM

Re: Draw ROI in afni using atlases

Daniel Glen March 05, 2018 12:00PM

Re: Draw ROI in afni using atlases

Zhang Yu March 05, 2018 12:55PM

Re: Draw ROI in afni using atlases

Daniel Glen March 05, 2018 01:45PM

Brainnetome Atlas! Attachments

Daniel Glen March 05, 2018 06:37PM

Re: Brainnetome Atlas!

Zhang Yu March 09, 2018 04:36AM