AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
April 16, 2018 03:45PM
> How would I generate a table with that information?

Once you set up your t-stat threshold and cluster threshold size, click “Clusterize” button on the AFNI GUI. On the popup window, change the number of “voxels” from the default of 20 to the threshold you want (e.g., from the output table of 3dClustSim). Click “Set”, and then you should be able to see those surviving clusters only. You can also click the button “Rpt” underneath “Clusterize”, and you will get a new window that tabulates the surviving clusters. You can navigate to any of those clusters by clicking buttons such as “Jump” or “Flash” on each row in the table.

On the window with the cluster table, there is a button that allows you to obtain a command with 3dclust. You can use that command on the terimal to obtain the table in text format.

Gang
Subject Author Posted

3dLME Output

AFNIbeginner April 16, 2018 09:42AM

Re: 3dLME Output

gang April 16, 2018 10:01AM

Re: 3dLME Output

AFNIbeginner April 16, 2018 11:55AM

Re: 3dLME Output

gang April 16, 2018 03:45PM

Re: 3dLME Output

AFNIbeginner April 16, 2018 04:40PM

Re: 3dLME Output

AFNIbeginner April 18, 2018 12:48PM

Re: 3dLME Output

gang April 18, 2018 02:38PM

Re: 3dLME Output

AFNIbeginner April 18, 2018 02:42PM

Re: 3dLME Output

gang April 18, 2018 03:08PM

Re: 3dLME Output

AFNIbeginner April 18, 2018 03:19PM

Re: 3dLME Output

gang April 18, 2018 05:23PM

Re: 3dLME Output

prerona March 20, 2020 12:47AM

Re: 3dLME Output

gang March 22, 2020 08:38AM