AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
April 16, 2018 04:40PM
Thank you. So this is the output that I get from the table. Does the "mean" represent the effect estimate (beta)? And then where can I find the t-stat and degrees of freedom?

#Cluster report for file /Applications/freesurfer/Paper1/Fixed3_ACS_PCC.nii
#[Connectivity radius = 1.01 mm Volume threshold = 162.00 ]
#[Single voxel volume = 27.0 (microliters) ]
#[Voxel datum type = float ]
#[Voxel dimensions = 3.000 mm X 3.000 mm X 3.000 mm ]
#[Coordinates Order = RAI ]
#[Fake voxel dimen = 1.000 mm X 1.000 mm X 1.000 mm ]
#Mean and SEM based on Absolute Value of voxel intensities:
#
#Volume CM RL CM AP CM IS minRL maxRL minAP maxAP minIS maxIS Mean SEM Max Int MI RL MI AP MI IS
#------ ----- ----- ----- ----- ----- ----- ----- ----- ----- ------- ------- ------- ----- ----- -----
474 1.2 56.3 26.3 -13.5 13.5 37.5 76.5 2.5 47.5 0.0064 2.2e-04 0.0253 7.5 55.5 23.5
365 1.0 -50.8 17.5 -10.5 13.5 -64.5 -34.5 -12.5 47.5 0.0072 2.7e-04 -0.0229 -7.5 -49.5 8.5
38 0.3 24.3 32.8 -4.5 4.5 10.5 34.5 26.5 35.5 0.0049 6.0e-04 -0.0132 1.5 25.5 32.5
22 56.5 9.4 -10.4 49.5 61.5 4.5 13.5 -18.5 -6.5 0.0043 6.8e-04 -0.0108 61.5 10.5 -9.5
17 -51.5 62.7 21.2 -55.5 -46.5 58.5 67.5 14.5 29.5 0.0052 8.5e-04 0.0145 -46.5 61.5 17.5
16 49.8 58.6 22.6 46.5 52.5 55.5 61.5 11.5 29.5 0.0087 0.0016 0.0188 49.5 58.5 26.5
13 18.0 -30.8 54.1 13.5 19.5 -34.5 -28.5 47.5 59.5 0.0041 9.4e-04 0.0101 19.5 -31.5 53.5
11 -20.2 -29.3 53.7 -25.5 -13.5 -34.5 -28.5 50.5 56.5 0.0059 0.0012 0.0121 -19.5 -28.5 56.5
10 41.4 62.1 20.0 40.5 43.5 58.5 67.5 14.5 23.5 0.0027 6.9e-04 -0.006 40.5 64.5 23.5
9 -61.9 12.8 -10.1 -64.5 -61.5 10.5 16.5 -15.5 -6.5 0.0079 0.0022 0.0192 -61.5 10.5 -9.5
7 44.9 -33.7 -6.1 43.5 46.5 -37.5 -31.5 -9.5 -3.5 0.0043 9.7e-04 -0.008 43.5 -34.5 -6.5
7 0.6 -34.5 13.6 -1.5 1.5 -37.5 -31.5 8.5 14.5 0.0049 0.0016 -0.0115 1.5 -34.5 14.5
7 47.6 67.2 26.0 46.5 49.5 64.5 67.5 20.5 29.5 0.0061 0.0016 0.0122 46.5 67.5 29.5
7 16.7 -24.9 56.6 13.5 19.5 -25.5 -22.5 53.5 59.5 0.004 0.0013 -0.0106 19.5 -25.5 56.5
6 -62.0 -0.5 -19.7 -64.5 -61.5 -4.5 1.5 -21.5 -15.5 0.0069 0.0021 -0.0151 -61.5 1.5 -18.5
6 13.0 -57.8 27.8 10.5 13.5 -58.5 -55.5 23.5 32.5 0.0078 0.0022 -0.0146 13.5 -58.5 26.5
Subject Author Posted

3dLME Output

AFNIbeginner April 16, 2018 09:42AM

Re: 3dLME Output

gang April 16, 2018 10:01AM

Re: 3dLME Output

AFNIbeginner April 16, 2018 11:55AM

Re: 3dLME Output

gang April 16, 2018 03:45PM

Re: 3dLME Output

AFNIbeginner April 16, 2018 04:40PM

Re: 3dLME Output

AFNIbeginner April 18, 2018 12:48PM

Re: 3dLME Output

gang April 18, 2018 02:38PM

Re: 3dLME Output

AFNIbeginner April 18, 2018 02:42PM

Re: 3dLME Output

gang April 18, 2018 03:08PM

Re: 3dLME Output

AFNIbeginner April 18, 2018 03:19PM

Re: 3dLME Output

gang April 18, 2018 05:23PM

Re: 3dLME Output

prerona March 20, 2020 12:47AM

Re: 3dLME Output

gang March 22, 2020 08:38AM