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Dear AFNI users-
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely, AFNI HQ
We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:
https://discuss.afni.nimh.nih.gov
Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.
The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.
Sincerely, AFNI HQ
| April 22, 2018 10:22AM | |
Registered: 6 years ago Posts: 21 |
Good morning, I was running 3dDeconvolve when I got this error
*** buffer overflow detected ***: 3dDeconvolve terminated
======= Backtrace: =========
/lib/x86_64-linux-gnu/libc.so.6(+0x777e5)[0x7f57005d17e5]
/lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x5c)[0x7f570067315c]
/lib/x86_64-linux-gnu/libc.so.6(+0x117160)[0x7f5700671160]
/lib/x86_64-linux-gnu/libc.so.6(+0x1166c9)[0x7f57006706c9]
/lib/x86_64-linux-gnu/libc.so.6(_IO_default_xsputn+0x80)[0x7f57005d56b0]
/lib/x86_64-linux-gnu/libc.so.6(_IO_vfprintf+0xc90)[0x7f57005a7e00]
/lib/x86_64-linux-gnu/libc.so.6(__vsprintf_chk+0x84)[0x7f5700670754]
/lib/x86_64-linux-gnu/libc.so.6(__sprintf_chk+0x7d)[0x7f57006706ad]
3dDeconvolve[0x7acdd2]
3dDeconvolve[0x41c8f9]
3dDeconvolve[0x41ffe5]
3dDeconvolve[0x433985]
3dDeconvolve[0x4068b9]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7f570057a830]
3dDeconvolve[0x406be9]
======= Memory map: ========
00400000-0097d000 r-xp 00000000 08:09 6173074 /home/cauzzo_s/abin/3dDeconvolve
00b7d000-00b80000 r--p 0057d000 08:09 6173074 /home/cauzzo_s/abin/3dDeconvolve
00b80000-00bbb000 rw-p 00580000 08:09 6173074 /home/cauzzo_s/abin/3dDeconvolve
00bbb000-00c2d000 rw-p 00000000 00:00 0
01da1000-0212c000 rw-p 00000000 00:00 0 [heap]
7f56ff1b3000-7f56ff1c9000 r-xp 00000000 08:09 3543603 /lib/x86_64-linux-gnu/libgcc_s.so.1
7f56ff1c9000-7f56ff3c8000 ---p 00016000 08:09 3543603 /lib/x86_64-linux-gnu/libgcc_s.so.1
7f56ff3c8000-7f56ff3c9000 rw-p 00015000 08:09 3543603 /lib/x86_64-linux-gnu/libgcc_s.so.1
7f56ff3c9000-7f56ff3ce000 r-xp 00000000 08:09 4464823 /usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0
7f56ff3ce000-7f56ff5cd000 ---p 00005000 08:09 4464823 /usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0
7f56ff5cd000-7f56ff5ce000 r--p 00004000 08:09 4464823 /usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0
7f56ff5ce000-7f56ff5cf000 rw-p 00005000 08:09 4464823 /usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0
7f56ff5cf000-7f56ff5d1000 r-xp 00000000 08:09 4464812 /usr/lib/x86_64-linux-gnu/libXau.so.6.0.0
7f56ff5d1000-7f56ff7d1000 ---p 00002000 08:09 4464812 /usr/lib/x86_64-linux-gnu/libXau.so.6.0.0
7f56ff7d1000-7f56ff7d2000 r--p 00002000 08:09 4464812 /usr/lib/x86_64-linux-gnu/libXau.so.6.0.0
7f56ff7d2000-7f56ff7d3000 rw-p 00003000 08:09 4464812 /usr/lib/x86_64-linux-gnu/libXau.so.6.0.0
7f56ff7d3000-7f56ff7d6000 r-xp 00000000 08:09 3543733 /lib/x86_64-linux-gnu/libdl-2.23.so
7f56ff7d6000-7f56ff9d5000 ---p 00003000 08:09 3543733 /lib/x86_64-linux-gnu/libdl-2.23.so
7f56ff9d5000-7f56ff9d6000 r--p 00002000 08:09 3543733 /lib/x86_64-linux-gnu/libdl-2.23.so
7f56ff9d6000-7f56ff9d7000 rw-p 00003000 08:09 3543733 /lib/x86_64-linux-gnu/libdl-2.23.so
7f56ff9d7000-7f56ff9f8000 r-xp 00000000 08:09 4466230 /usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0
7f56ff9f8000-7f56ffbf7000 ---p 00021000 08:09 4466230 /usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0
7f56ffbf7000-7f56ffbf8000 r--p 00020000 08:09 4466230 /usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0
7f56ffbf8000-7f56ffbf9000 rw-p 00021000 08:09 4466230 /usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0
7f56ffbf9000-7f56ffbfd000 r-xp 00000000 08:09 3543538 /lib/x86_64-linux-gnu/libuuid.so.1.3.0
7f56ffbfd000-7f56ffdfc000 ---p 00004000 08:09 3543538 /lib/x86_64-linux-gnu/libuuid.so.1.3.0
7f56ffdfc000-7f56ffdfd000 r--p 00003000 08:09 3543538 /lib/x86_64-linux-gnu/libuuid.so.1.3.0
7f56ffdfd000-7f56ffdfe000 rw-p 00004000 08:09 3543538 /lib/x86_64-linux-gnu/libuuid.so.1.3.0
7f56ffdfe000-7f56fff33000 r-xp 00000000 08:09 4464808 /usr/lib/x86_64-linux-gnu/libX11.so.6.3.0
7f56fff33000-7f5700133000 ---p 00135000 08:09 4464808 /usr/lib/x86_64-linux-gnu/libX11.so.6.3.0
7f5700133000-7f5700134000 r--p 00135000 08:09 4464808 /usr/lib/x86_64-linux-gnu/libX11.so.6.3.0
7f5700134000-7f5700138000 rw-p 00136000 08:09 4464808 /usr/lib/x86_64-linux-gnu/libX11.so.6.3.0
7f5700138000-7f570014e000 r-xp 00000000 08:09 4464676 /usr/lib/x86_64-linux-gnu/libICE.so.6.3.0
7f570014e000-7f570034d000 ---p 00016000 08:09 4464676 /usr/lib/x86_64-linux-gnu/libICE.so.6.3.0
7f570034d000-7f570034e000 r--p 00015000 08:09 4464676 /usr/lib/x86_64-linux-gnu/libICE.so.6.3.0
7f570034e000-7f570034f000 rw-p 00016000 08:09 4464676 /usr/lib/x86_64-linux-gnu/libICE.so.6.3.0
7f570034f000-7f5700352000 rw-p 00000000 00:00 0
7f5700352000-7f5700359000 r-xp 00000000 08:09 4464798 /usr/lib/x86_64-linux-gnu/libSM.so.6.0.1
7f5700359000-7f5700558000 ---p 00007000 08:09 4464798 /usr/lib/x86_64-linux-gnu/libSM.so.6.0.1
7f5700558000-7f5700559000 r--p 00006000 08:09 4464798 /usr/lib/x86_64-linux-gnu/libSM.so.6.0.1
7f5700559000-7f570055a000 rw-p 00007000 08:09 4464798 /usr/lib/x86_64-linux-gnu/libSM.so.6.0.1
7f570055a000-7f570071a000 r-xp 00000000 08:09 3543620 /lib/x86_64-linux-gnu/libc-2.23.so
7f570071a000-7f570091a000 ---p 001c0000 08:09 3543620 /lib/x86_64-linux-gnu/libc-2.23.so
7f570091a000-7f570091e000 r--p 001c0000 08:09 3543620 /lib/x86_64-linux-gnu/libc-2.23.so
7f570091e000-7f5700920000 rw-p 001c4000 08:09 3543620 /lib/x86_64-linux-gnu/libc-2.23.so
7f5700920000-7f5700924000 rw-p 00000000 00:00 0
7f5700924000-7f5700a2c000 r-xp 00000000 08:09 3543472 /lib/x86_64-linux-gnu/libm-2.23.so
7f5700a2c000-7f5700c2b000 ---p 00108000 08:09 3543472 /lib/x86_64-linux-gnu/libm-2.23.so
7f5700c2b000-7f5700c2c000 r--p 00107000 08:09 3543472 /lib/x86_64-linux-gnu/libm-2.23.so
7f5700c2c000-7f5700c2d000 rw-p 00108000 08:09 3543472 /lib/x86_64-linux-gnu/libm-2.23.so
7f5700c2d000-7f5700c53000 r-xp 00000000 08:09 3543596 /lib/x86_64-linux-gnu/libexpat.so.1.6.0
7f5700c53000-7f5700e53000 ---p 00026000 08:09 3543596 /lib/x86_64-linux-gnu/libexpat.so.1.6.0
7f5700e53000-7f5700e55000 r--p 00026000 08:09 3543596 /lib/x86_64-linux-gnu/libexpat.so.1.6.0
7f5700e55000-7f5700e56000 rw-p 00028000 08:09 3543596 /lib/x86_64-linux-gnu/libexpat.so.1.6.0
7f5700e56000-7f5700e6f000 r-xp 00000000 08:09 3543756 /lib/x86_64-linux-gnu/libz.so.1.2.8
7f5700e6f000-7f570106e000 ---p 00019000 08:09 3543756 /lib/x86_64-linux-gnu/libz.so.1.2.8
7f570106e000-7f570106f000 r--p 00018000 08:09 3543756 /lib/x86_64-linux-gnu/libz.so.1.2.8
7f570106f000-7f5701070000 rw-p 00019000 08:09 3543756 /lib/x86_64-linux-gnu/libz.so.1.2.8
7f5701070000-7f57010d2000 r-xp 00000000 08:09 4464851 /usr/lib/x86_64-linux-gnu/libXt.so.6.0.0
7f57010d2000-7f57012d2000 ---p 00062000 08:09 4464851 /usr/lib/x86_64-linux-gnu/libXt.so.6.0.0
7f57012d2000-7f57012d3000 r--p 00062000 08:09 4464851 /usr/lib/x86_64-linux-gnu/libXt.so.6.0.0
7f57012d3000-7f57012d8000 rw-p 00063000 08:09 4464851 /usr/lib/x86_64-linux-gnu/libXt.so.6.0.0
7f57012d8000-7f57012d9000 rw-p 00000000 00:00 0
7f57012d9000-7f57012ff000 r-xp 00000000 08:09 3543518 /lib/x86_64-linux-gnu/ld-2.23.so
7f57014dc000-7f57014e4000 rw-p 00000000 00:00 0
7f57014fd000-7f57014fe000 rw-p 00000000 00:00 0
7f57014fe000-7f57014ff000 r--p 00025000 08:09 3543518 /lib/x86_64-linux-gnu/ld-2.23.so
7f57014ff000-7f5701500000 rw-p 00026000 08:09 3543518 /lib/x86_64-linux-gnu/ld-2.23.so
7f5701500000-7f5701501000 rw-p 00000000 00:00 0
7ffffc97e000-7ffffc99f000 rw-p 00000000 00:00 0 [stack]
7ffffc9a0000-7ffffc9a3000 r--p 00000000 00:00 0 [vvar]
7ffffc9a3000-7ffffc9a5000 r-xp 00000000 00:00 0 [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]
Fatal Signal 6 (SIGABRT) received
read_glt_matrix
read_input_data
initialize_program
3dDeconvolve main
Bottom of Debug Stack
** Command line was:
3dDeconvolve -input apnea.subj_010.scale+orig.HEAD -polort 3 -mask /home/cauzzo_s/../../media/cauzzo_s/TOSHIBA_EXT/BHOLD/EPI_to_temp/mask_epi_to_temp/mask_full_apnea_oasis+orig -num_stimts 14 -stim_times 1 ../stim/stim_block_times.1D GAM -stim_label 1 apnea -stim_times_AM1 2 ../stim/AM_PETCO2_fitt_TR_d12_p1.01.1D GAM -stim_label 2 petco2_p1 -stim_times_AM1 3 ../stim/AM_PETCO2_fitt_TR_d12_p2.01.1D GAM -stim_label 3 petco2_p2 -stim_times_AM1 4 ../stim/AM_PETCO2_fitt_TR_d12_p3.01.1D GAM -stim_label 4 petco2_p3 -stim_times_AM1 5 ../stim/AM_PETCO2_fitt_TR_d12_p4.01.1D GAM -stim_label 5 petco2_p4 -stim_times_AM1 6 ../stim/AM_PETCO2_fitt_TR_d12_p5.01.1D GAM -stim_label 6 petco2_p5 -stim_times 7 ../stim/touch_start.1D GAM -stim_label 7 touch_start -stim_times 8 ../stim/touch_end.1D GAM -stim_label 8 touch_end -stim_file 9 '../stim/nap_apnea_mov.1D[0]' -stim_base 9 -stim_label 9 roll -stim_file 10 '../stim/nap_apnea_mov.1D[1]' -stim_base 10 -stim_label 10 pitch -stim_file 11 '../stim/nap_apnea_mov.1D[2]' -stim_base 11 -stim_label 11 yaw -stim_file 12 '../stim/nap_apnea_mov.1D[3]' -stim_base 12 -stim_label 12 dS -stim_file 13 '../stim/nap_apnea_mov.1D[4]' -stim_base 13 -stim_label 13 dL -stim_file 14 '../stim/nap_apnea_mov.1D[5]' -stim_base 14 -stim_label 14 dP -fout -tout -rout -x1D X.xmat.1D -xjpeg X.jpg -glt 1 ../../glts/glt_12-3_AM1_o5.mat -glt_label 1 sum_poly -glt 2 ../../glts/glt_12-3_AM1_o5_nl.mat -glt_label 1 sum_nlin -fitts fitts.subj_010 -errts errts.subj_010 -jobs 4 -x1D_stop -bucket stats.subj_010
** AFNI version = AFNI_17.3.05 Compile date = Nov 27 2017
** [[Precompiled binary linux_ubuntu_16_64: Nov 27 2017]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Memory usage: chunks=4029 bytes=2557086
** Crash log is appended to file /home/cauzzo_s/.afni.crashlog
*** buffer overflow detected ***: 3dDeconvolve terminated
======= Backtrace: =========
/lib/x86_64-linux-gnu/libc.so.6(+0x777e5)[0x7f57005d17e5]
/lib/x86_64-linux-gnu/libc.so.6(__fortify_fail+0x5c)[0x7f570067315c]
/lib/x86_64-linux-gnu/libc.so.6(+0x117160)[0x7f5700671160]
/lib/x86_64-linux-gnu/libc.so.6(+0x1166c9)[0x7f57006706c9]
/lib/x86_64-linux-gnu/libc.so.6(_IO_default_xsputn+0x80)[0x7f57005d56b0]
/lib/x86_64-linux-gnu/libc.so.6(_IO_vfprintf+0xc90)[0x7f57005a7e00]
/lib/x86_64-linux-gnu/libc.so.6(__vsprintf_chk+0x84)[0x7f5700670754]
/lib/x86_64-linux-gnu/libc.so.6(__sprintf_chk+0x7d)[0x7f57006706ad]
3dDeconvolve[0x7acdd2]
3dDeconvolve[0x41c8f9]
3dDeconvolve[0x41ffe5]
3dDeconvolve[0x433985]
3dDeconvolve[0x4068b9]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf0)[0x7f570057a830]
3dDeconvolve[0x406be9]
======= Memory map: ========
00400000-0097d000 r-xp 00000000 08:09 6173074 /home/cauzzo_s/abin/3dDeconvolve
00b7d000-00b80000 r--p 0057d000 08:09 6173074 /home/cauzzo_s/abin/3dDeconvolve
00b80000-00bbb000 rw-p 00580000 08:09 6173074 /home/cauzzo_s/abin/3dDeconvolve
00bbb000-00c2d000 rw-p 00000000 00:00 0
01da1000-0212c000 rw-p 00000000 00:00 0 [heap]
7f56ff1b3000-7f56ff1c9000 r-xp 00000000 08:09 3543603 /lib/x86_64-linux-gnu/libgcc_s.so.1
7f56ff1c9000-7f56ff3c8000 ---p 00016000 08:09 3543603 /lib/x86_64-linux-gnu/libgcc_s.so.1
7f56ff3c8000-7f56ff3c9000 rw-p 00015000 08:09 3543603 /lib/x86_64-linux-gnu/libgcc_s.so.1
7f56ff3c9000-7f56ff3ce000 r-xp 00000000 08:09 4464823 /usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0
7f56ff3ce000-7f56ff5cd000 ---p 00005000 08:09 4464823 /usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0
7f56ff5cd000-7f56ff5ce000 r--p 00004000 08:09 4464823 /usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0
7f56ff5ce000-7f56ff5cf000 rw-p 00005000 08:09 4464823 /usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0
7f56ff5cf000-7f56ff5d1000 r-xp 00000000 08:09 4464812 /usr/lib/x86_64-linux-gnu/libXau.so.6.0.0
7f56ff5d1000-7f56ff7d1000 ---p 00002000 08:09 4464812 /usr/lib/x86_64-linux-gnu/libXau.so.6.0.0
7f56ff7d1000-7f56ff7d2000 r--p 00002000 08:09 4464812 /usr/lib/x86_64-linux-gnu/libXau.so.6.0.0
7f56ff7d2000-7f56ff7d3000 rw-p 00003000 08:09 4464812 /usr/lib/x86_64-linux-gnu/libXau.so.6.0.0
7f56ff7d3000-7f56ff7d6000 r-xp 00000000 08:09 3543733 /lib/x86_64-linux-gnu/libdl-2.23.so
7f56ff7d6000-7f56ff9d5000 ---p 00003000 08:09 3543733 /lib/x86_64-linux-gnu/libdl-2.23.so
7f56ff9d5000-7f56ff9d6000 r--p 00002000 08:09 3543733 /lib/x86_64-linux-gnu/libdl-2.23.so
7f56ff9d6000-7f56ff9d7000 rw-p 00003000 08:09 3543733 /lib/x86_64-linux-gnu/libdl-2.23.so
7f56ff9d7000-7f56ff9f8000 r-xp 00000000 08:09 4466230 /usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0
7f56ff9f8000-7f56ffbf7000 ---p 00021000 08:09 4466230 /usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0
7f56ffbf7000-7f56ffbf8000 r--p 00020000 08:09 4466230 /usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0
7f56ffbf8000-7f56ffbf9000 rw-p 00021000 08:09 4466230 /usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0
7f56ffbf9000-7f56ffbfd000 r-xp 00000000 08:09 3543538 /lib/x86_64-linux-gnu/libuuid.so.1.3.0
7f56ffbfd000-7f56ffdfc000 ---p 00004000 08:09 3543538 /lib/x86_64-linux-gnu/libuuid.so.1.3.0
7f56ffdfc000-7f56ffdfd000 r--p 00003000 08:09 3543538 /lib/x86_64-linux-gnu/libuuid.so.1.3.0
7f56ffdfd000-7f56ffdfe000 rw-p 00004000 08:09 3543538 /lib/x86_64-linux-gnu/libuuid.so.1.3.0
7f56ffdfe000-7f56fff33000 r-xp 00000000 08:09 4464808 /usr/lib/x86_64-linux-gnu/libX11.so.6.3.0
7f56fff33000-7f5700133000 ---p 00135000 08:09 4464808 /usr/lib/x86_64-linux-gnu/libX11.so.6.3.0
7f5700133000-7f5700134000 r--p 00135000 08:09 4464808 /usr/lib/x86_64-linux-gnu/libX11.so.6.3.0
7f5700134000-7f5700138000 rw-p 00136000 08:09 4464808 /usr/lib/x86_64-linux-gnu/libX11.so.6.3.0
7f5700138000-7f570014e000 r-xp 00000000 08:09 4464676 /usr/lib/x86_64-linux-gnu/libICE.so.6.3.0
7f570014e000-7f570034d000 ---p 00016000 08:09 4464676 /usr/lib/x86_64-linux-gnu/libICE.so.6.3.0
7f570034d000-7f570034e000 r--p 00015000 08:09 4464676 /usr/lib/x86_64-linux-gnu/libICE.so.6.3.0
7f570034e000-7f570034f000 rw-p 00016000 08:09 4464676 /usr/lib/x86_64-linux-gnu/libICE.so.6.3.0
7f570034f000-7f5700352000 rw-p 00000000 00:00 0
7f5700352000-7f5700359000 r-xp 00000000 08:09 4464798 /usr/lib/x86_64-linux-gnu/libSM.so.6.0.1
7f5700359000-7f5700558000 ---p 00007000 08:09 4464798 /usr/lib/x86_64-linux-gnu/libSM.so.6.0.1
7f5700558000-7f5700559000 r--p 00006000 08:09 4464798 /usr/lib/x86_64-linux-gnu/libSM.so.6.0.1
7f5700559000-7f570055a000 rw-p 00007000 08:09 4464798 /usr/lib/x86_64-linux-gnu/libSM.so.6.0.1
7f570055a000-7f570071a000 r-xp 00000000 08:09 3543620 /lib/x86_64-linux-gnu/libc-2.23.so
7f570071a000-7f570091a000 ---p 001c0000 08:09 3543620 /lib/x86_64-linux-gnu/libc-2.23.so
7f570091a000-7f570091e000 r--p 001c0000 08:09 3543620 /lib/x86_64-linux-gnu/libc-2.23.so
7f570091e000-7f5700920000 rw-p 001c4000 08:09 3543620 /lib/x86_64-linux-gnu/libc-2.23.so
7f5700920000-7f5700924000 rw-p 00000000 00:00 0
7f5700924000-7f5700a2c000 r-xp 00000000 08:09 3543472 /lib/x86_64-linux-gnu/libm-2.23.so
7f5700a2c000-7f5700c2b000 ---p 00108000 08:09 3543472 /lib/x86_64-linux-gnu/libm-2.23.so
7f5700c2b000-7f5700c2c000 r--p 00107000 08:09 3543472 /lib/x86_64-linux-gnu/libm-2.23.so
7f5700c2c000-7f5700c2d000 rw-p 00108000 08:09 3543472 /lib/x86_64-linux-gnu/libm-2.23.so
7f5700c2d000-7f5700c53000 r-xp 00000000 08:09 3543596 /lib/x86_64-linux-gnu/libexpat.so.1.6.0
7f5700c53000-7f5700e53000 ---p 00026000 08:09 3543596 /lib/x86_64-linux-gnu/libexpat.so.1.6.0
7f5700e53000-7f5700e55000 r--p 00026000 08:09 3543596 /lib/x86_64-linux-gnu/libexpat.so.1.6.0
7f5700e55000-7f5700e56000 rw-p 00028000 08:09 3543596 /lib/x86_64-linux-gnu/libexpat.so.1.6.0
7f5700e56000-7f5700e6f000 r-xp 00000000 08:09 3543756 /lib/x86_64-linux-gnu/libz.so.1.2.8
7f5700e6f000-7f570106e000 ---p 00019000 08:09 3543756 /lib/x86_64-linux-gnu/libz.so.1.2.8
7f570106e000-7f570106f000 r--p 00018000 08:09 3543756 /lib/x86_64-linux-gnu/libz.so.1.2.8
7f570106f000-7f5701070000 rw-p 00019000 08:09 3543756 /lib/x86_64-linux-gnu/libz.so.1.2.8
7f5701070000-7f57010d2000 r-xp 00000000 08:09 4464851 /usr/lib/x86_64-linux-gnu/libXt.so.6.0.0
7f57010d2000-7f57012d2000 ---p 00062000 08:09 4464851 /usr/lib/x86_64-linux-gnu/libXt.so.6.0.0
7f57012d2000-7f57012d3000 r--p 00062000 08:09 4464851 /usr/lib/x86_64-linux-gnu/libXt.so.6.0.0
7f57012d3000-7f57012d8000 rw-p 00063000 08:09 4464851 /usr/lib/x86_64-linux-gnu/libXt.so.6.0.0
7f57012d8000-7f57012d9000 rw-p 00000000 00:00 0
7f57012d9000-7f57012ff000 r-xp 00000000 08:09 3543518 /lib/x86_64-linux-gnu/ld-2.23.so
7f57014dc000-7f57014e4000 rw-p 00000000 00:00 0
7f57014fd000-7f57014fe000 rw-p 00000000 00:00 0
7f57014fe000-7f57014ff000 r--p 00025000 08:09 3543518 /lib/x86_64-linux-gnu/ld-2.23.so
7f57014ff000-7f5701500000 rw-p 00026000 08:09 3543518 /lib/x86_64-linux-gnu/ld-2.23.so
7f5701500000-7f5701501000 rw-p 00000000 00:00 0
7ffffc97e000-7ffffc99f000 rw-p 00000000 00:00 0 [stack]
7ffffc9a0000-7ffffc9a3000 r--p 00000000 00:00 0 [vvar]
7ffffc9a3000-7ffffc9a5000 r-xp 00000000 00:00 0 [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall]
Fatal Signal 6 (SIGABRT) received
read_glt_matrix
read_input_data
initialize_program
3dDeconvolve main
Bottom of Debug Stack
** Command line was:
3dDeconvolve -input apnea.subj_010.scale+orig.HEAD -polort 3 -mask /home/cauzzo_s/../../media/cauzzo_s/TOSHIBA_EXT/BHOLD/EPI_to_temp/mask_epi_to_temp/mask_full_apnea_oasis+orig -num_stimts 14 -stim_times 1 ../stim/stim_block_times.1D GAM -stim_label 1 apnea -stim_times_AM1 2 ../stim/AM_PETCO2_fitt_TR_d12_p1.01.1D GAM -stim_label 2 petco2_p1 -stim_times_AM1 3 ../stim/AM_PETCO2_fitt_TR_d12_p2.01.1D GAM -stim_label 3 petco2_p2 -stim_times_AM1 4 ../stim/AM_PETCO2_fitt_TR_d12_p3.01.1D GAM -stim_label 4 petco2_p3 -stim_times_AM1 5 ../stim/AM_PETCO2_fitt_TR_d12_p4.01.1D GAM -stim_label 5 petco2_p4 -stim_times_AM1 6 ../stim/AM_PETCO2_fitt_TR_d12_p5.01.1D GAM -stim_label 6 petco2_p5 -stim_times 7 ../stim/touch_start.1D GAM -stim_label 7 touch_start -stim_times 8 ../stim/touch_end.1D GAM -stim_label 8 touch_end -stim_file 9 '../stim/nap_apnea_mov.1D[0]' -stim_base 9 -stim_label 9 roll -stim_file 10 '../stim/nap_apnea_mov.1D[1]' -stim_base 10 -stim_label 10 pitch -stim_file 11 '../stim/nap_apnea_mov.1D[2]' -stim_base 11 -stim_label 11 yaw -stim_file 12 '../stim/nap_apnea_mov.1D[3]' -stim_base 12 -stim_label 12 dS -stim_file 13 '../stim/nap_apnea_mov.1D[4]' -stim_base 13 -stim_label 13 dL -stim_file 14 '../stim/nap_apnea_mov.1D[5]' -stim_base 14 -stim_label 14 dP -fout -tout -rout -x1D X.xmat.1D -xjpeg X.jpg -glt 1 ../../glts/glt_12-3_AM1_o5.mat -glt_label 1 sum_poly -glt 2 ../../glts/glt_12-3_AM1_o5_nl.mat -glt_label 1 sum_nlin -fitts fitts.subj_010 -errts errts.subj_010 -jobs 4 -x1D_stop -bucket stats.subj_010
** AFNI version = AFNI_17.3.05 Compile date = Nov 27 2017
** [[Precompiled binary linux_ubuntu_16_64: Nov 27 2017]]
** Program Death **
** If you report this crash to the AFNI message board,
** please copy the error messages EXACTLY, and give
** the command line you used to run the program, and
** any other information needed to repeat the problem.
** You may later be asked to upload data to help debug.
** Memory usage: chunks=4029 bytes=2557086
** Crash log is appended to file /home/cauzzo_s/.afni.crashlog
| Subject | Author | Posted |
|---|---|---|
|
Simone Cauzzo | April 22, 2018 10:22AM |
|
rick reynolds | April 23, 2018 08:04PM |
