AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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May 10, 2018 03:18PM
Worth verifying with your scan center, but I believe your timing should be "alt+z2" for even number of slices. Depending on which scanner, which software version, and which sequence of course. The incorrect timing information on slice time correction could play decent havoc on your analyses. Particularly with such a large TR window.

Also, as Bob mentioned a censor threshold of 3.0 is massive, and doesn't correspond to 3mm/3degrees of movement, we do the calculations on euclidean distances, hence the recommendation of 0.2 or so. That would at least put it in the range of other software packages like CONN for censoring motion out. You may also want a -regress_censor_outliers 0.1.

Change those two things and re-run and get back to me!

-Pete
Subject Author Posted

AFNI does not give logical result

trabz May 09, 2018 08:05AM

Re: AFNI does not give logical result

Peter Molfese May 09, 2018 08:36AM

Re: AFNI does not give logical result

trabz May 09, 2018 06:57PM

Re: AFNI does not give logical result

RWCox May 10, 2018 10:13AM

Re: AFNI does not give logical result

trabz May 10, 2018 01:11PM

Re: AFNI does not give logical result

Peter Molfese May 10, 2018 02:09PM

Re: AFNI does not give logical result

trabz May 10, 2018 02:21PM

Re: AFNI does not give logical result

Peter Molfese May 10, 2018 03:18PM

Re: AFNI does not give logical result

trabz May 11, 2018 07:16AM

Re: AFNI does not give logical result

Peter Molfese May 11, 2018 08:51AM

Re: AFNI does not give logical result

trabz May 11, 2018 10:05AM

Re: AFNI does not give logical result

Peter Molfese May 11, 2018 10:19AM

Re: AFNI does not give logical result

trabz May 11, 2018 11:58AM

Re: AFNI does not give logical result

RWCox May 11, 2018 12:42PM

Re: AFNI does not give logical result

trabz May 11, 2018 01:18PM

Re: AFNI does not give logical result

RWCox May 13, 2018 05:27PM

Re: AFNI does not give logical result

trabz May 15, 2018 06:21AM

Re: AFNI does not give logical result

rick reynolds May 15, 2018 09:32AM

Re: AFNI does not give logical result

trabz May 17, 2018 10:00PM

Re: AFNI does not give logical result

rick reynolds May 22, 2018 02:04PM

Re: AFNI does not give logical result

trabz July 13, 2018 02:59PM