AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Daniel Glen
June 05, 2018 08:08AM
Mostly, running shell commands in Matlab works fine, and little has to be specific for AFNI programs to work. Matlab uses the sh shell (neither bash nor tcsh, but the Bourne shell), and the configuration for that shell needs to be correct. You can either have Matlab use a different shell through environment variables like MATLAB_SHELL or add PATH and DYLD_LIBRARY_PATH to a .profile file in your home directory. On a Mac, you may also need to set DYLD_LIBRARY_PATH in the terminal or shell used to start MATLAB and launch from the command line rather than run it from a GUI launcher. Security protection implemented on the MacOS could be turned off too. See these links for some more info.

[www.mathworks.com]
[osr600doc.xinuos.com]
[www.mathworks.com]
[afni.nimh.nih.gov]
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Using AFNI commands in Matlab

sungshinkim June 03, 2018 08:47PM

Re: Using AFNI commands in Matlab

Daniel Glen June 05, 2018 08:08AM