AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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xiangyang
June 20, 2018 08:18AM
I want to map data from a surface domain(te_normalized at individual level) to an AFNI volume domain(group level),but it doesn't work. The script is as follows:

cd $spath/sub01/surface_files
foreach hemi (lh rh)
3dSurf2Vol \
-spec $spath/group/freesurfer/SUMA/subAvg_"$hemi"+tlrc.spec \
-surf_A smoothwm \
-surf_B pial \
-sv $spath/group/subAvg_SurfVol_at+tlrc.nii.gz \
-grid_parent "$spath"/"$sub"/orig_files/ts_normalized_at+tlrc.nii.gz \
-sdata_1D "$hemi"_ts_normalized.1D \
-datum float \
-map_func max_abs \
-f_steps 15 \
-f_index voxels \
-f_p1_fr -0.2 -f_pn_fr 0.4 \
-prefix ./"$hemi"_ts_normalized_sb
end
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Subject Author Posted

3dSurf2Vol

xiangyang June 20, 2018 08:18AM

Re: 3dSurf2Vol

ptaylor June 20, 2018 08:21AM

Re: 3dSurf2Vol

xiangyang June 20, 2018 08:27AM

Re: 3dSurf2Vol

ptaylor June 20, 2018 08:29AM

Re: 3dSurf2Vol

xiangyang June 20, 2018 08:34AM

Re: 3dSurf2Vol

ptaylor June 20, 2018 08:45AM

Re: 3dSurf2Vol

rick reynolds June 21, 2018 08:58AM