AFNI Message Board

History of AFNI updates  

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July 11, 2018 09:41AM
dowdlelt@hypnos:~$ afni_system_check.py -check_all
-------------------------------- general ---------------------------------
architecture:         64bit 
system:               Linux
release:              4.15.0-041500-generic
version:              #201801282230 SMP Sun Jan 28 22:31:30 UTC 2018
distribution:         debian stretch/sid 
number of CPUs:       16
apparent login shell: bash
shell RC file:        .bashrc (exists)

--------------------- AFNI and related program tests ---------------------
which afni           : /home/dowdlelt/abin/afni
afni version         : Precompiled binary linux_ubuntu_16_64: Jul  6 2018 
                     : AFNI_18.2.04
AFNI_version.txt     : AFNI_18.2.04, linux_ubuntu_16_64, Jul 06 2018
which python         : /home/dowdlelt/anaconda3/bin/python
python version       : 3.6.3
which R              : /usr/bin/R
R version            : R version 3.4.1 (2017-06-30) -- "Single Candle"
which tcsh           : /usr/bin/tcsh

instances of various programs found in PATH:
    afni    : 1   (/home/dowdlelt/abin/afni)
    R       : 1   (/usr/bin/R)
    python  : 2 
      /home/dowdlelt/anaconda3/bin/python3.6
      /usr/bin/python2.7
    python2 : 1   (/usr/bin/python2.7)
    python3 : 2 
      /home/dowdlelt/anaconda3/bin/python3.6
      /usr/bin/python3.5


testing ability to start various programs...
    afni                 : success
    suma                 : success
    3dSkullStrip         : success
    uber_subject.py      : success
    3dAllineate          : success
    3dRSFC               : success
    SurfMesh             : success
    3dClustSim           : success

checking for R packages...
    rPkgsInstall -pkgs ALL -check : FAILURE
        
        oo Warning: 
           These packages are not installed on the computer: brms!
        

checking for $HOME files...
    .afnirc                   : found
    .sumarc                   : found
    .afni/help/all_progs.COMP : found

------------------------------ python libs -------------------------------
** python module not found: PyQt4
-- PyQt4 is no longer needed for an AFNI bootcamp

-------------------------------- env vars --------------------------------
PATH = /home/dowdlelt/bin:/home/dowdlelt/anaconda3/bin:/home/dowdlelt/soft/code/other/pestica4/slomoco:/home/dowdlelt/soft/code/other/pestica4:/usr/local/fsl/bin:/home/dowdlelt/bin:/home/dowdlelt/soft/mrtrix3/bin:/home/dowdlelt/bin:/usr/local/freesurfer/bin:/usr/local/freesurfer/fsfast/bin:/usr/local/freesurfer/tktools:/usr/local/fsl/bin:/usr/local/freesurfer/mni/bin:/home/dowdlelt/bin:/home/dowdlelt/bin:/home/dowdlelt/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/usr/local/cuda/bin:/snap/bin:/home/dowdlelt/abin:/home/dowdlelt/soft/code/BROCCOLI/compiled/Bash/Linux/Release

PYTHONPATH = 
R_LIBS = /home/dowdlelt/R

LD_LIBRARY_PATH = :/usr/lib:/home/dowdlelt/soft/code/BROCCOLI/code/BROCCOLI_LIB/clBLASLinux

DYLD_LIBRARY_PATH = 
DYLD_FALLBACK_LIBRARY_PATH = 

------------------------------ data checks -------------------------------
data dir : found AFNI_data6   under $HOME/afni_class_data
           top history: ...PPI scripts are now based on FT_analysis/s05.ap.uber
data dir : found AFNI_demos   under $HOME/afni_class_data
           top history: ... [pault]: remove rank from FATCAT_DEMO, FAT_MVM_DEMO
data dir : missing suma_demo
data dir : found afni_handouts under $HOME/afni_class_data
atlas    : found TT_N27+tlrc  under /home/dowdlelt/abin

------------------------------ OS specific -------------------------------
which apt-get        : /usr/bin/apt-get
apt-get version      : apt 1.2.27 (amd64)


=========================  summary, please fix:  =========================
*  login shell 'bash', trusting user to translate from 'tcsh'
*  have python version 3.6.3, some programs need 2.7.x
*  missing R packages (see rPkgsInstall)
*  insufficient data for AFNI bootcamp
*  consider running: apt-get install python-qt4
Subject Author Posted

ETAC Warnings, can't load some *.minmax.1D files

dowdlelt July 10, 2018 12:32PM

Re: ETAC Warnings, can't load some *.minmax.1D files

dowdlelt July 11, 2018 07:50AM

Re: ETAC Warnings, can't load some *.minmax.1D files

Peter Molfese July 11, 2018 09:36AM

Re: ETAC Warnings, can't load some *.minmax.1D files

dowdlelt July 11, 2018 09:41AM

Re: ETAC Warnings, can't load some *.minmax.1D files

rick reynolds July 14, 2018 10:57PM

Re: ETAC Warnings, can't load some *.minmax.1D files

dowdlelt July 15, 2018 09:24AM

Re: ETAC Warnings, can't load some *.minmax.1D files

RWCox July 15, 2018 09:25PM

Re: ETAC Warnings, can't load some *.minmax.1D files

dowdlelt July 16, 2018 08:25AM

Re: ETAC Warnings, can't load some *.minmax.1D files

RWCox July 17, 2018 12:02PM



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