dowdlelt@hypnos:~$ afni_system_check.py -check_all
-------------------------------- general ---------------------------------
architecture: 64bit
system: Linux
release: 4.15.0-041500-generic
version: #201801282230 SMP Sun Jan 28 22:31:30 UTC 2018
distribution: debian stretch/sid
number of CPUs: 16
apparent login shell: bash
shell RC file: .bashrc (exists)
--------------------- AFNI and related program tests ---------------------
which afni : /home/dowdlelt/abin/afni
afni version : Precompiled binary linux_ubuntu_16_64: Jul 6 2018
: AFNI_18.2.04
AFNI_version.txt : AFNI_18.2.04, linux_ubuntu_16_64, Jul 06 2018
which python : /home/dowdlelt/anaconda3/bin/python
python version : 3.6.3
which R : /usr/bin/R
R version : R version 3.4.1 (2017-06-30) -- "Single Candle"
which tcsh : /usr/bin/tcsh
instances of various programs found in PATH:
afni : 1 (/home/dowdlelt/abin/afni)
R : 1 (/usr/bin/R)
python : 2
/home/dowdlelt/anaconda3/bin/python3.6
/usr/bin/python2.7
python2 : 1 (/usr/bin/python2.7)
python3 : 2
/home/dowdlelt/anaconda3/bin/python3.6
/usr/bin/python3.5
testing ability to start various programs...
afni : success
suma : success
3dSkullStrip : success
uber_subject.py : success
3dAllineate : success
3dRSFC : success
SurfMesh : success
3dClustSim : success
checking for R packages...
rPkgsInstall -pkgs ALL -check : FAILURE
oo Warning:
These packages are not installed on the computer: brms!
checking for $HOME files...
.afnirc : found
.sumarc : found
.afni/help/all_progs.COMP : found
------------------------------ python libs -------------------------------
** python module not found: PyQt4
-- PyQt4 is no longer needed for an AFNI bootcamp
-------------------------------- env vars --------------------------------
PATH = /home/dowdlelt/bin:/home/dowdlelt/anaconda3/bin:/home/dowdlelt/soft/code/other/pestica4/slomoco:/home/dowdlelt/soft/code/other/pestica4:/usr/local/fsl/bin:/home/dowdlelt/bin:/home/dowdlelt/soft/mrtrix3/bin:/home/dowdlelt/bin:/usr/local/freesurfer/bin:/usr/local/freesurfer/fsfast/bin:/usr/local/freesurfer/tktools:/usr/local/fsl/bin:/usr/local/freesurfer/mni/bin:/home/dowdlelt/bin:/home/dowdlelt/bin:/home/dowdlelt/.local/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/usr/local/cuda/bin:/snap/bin:/home/dowdlelt/abin:/home/dowdlelt/soft/code/BROCCOLI/compiled/Bash/Linux/Release
PYTHONPATH =
R_LIBS = /home/dowdlelt/R
LD_LIBRARY_PATH = :/usr/lib:/home/dowdlelt/soft/code/BROCCOLI/code/BROCCOLI_LIB/clBLASLinux
DYLD_LIBRARY_PATH =
DYLD_FALLBACK_LIBRARY_PATH =
------------------------------ data checks -------------------------------
data dir : found AFNI_data6 under $HOME/afni_class_data
top history: ...PPI scripts are now based on FT_analysis/s05.ap.uber
data dir : found AFNI_demos under $HOME/afni_class_data
top history: ... [pault]: remove rank from FATCAT_DEMO, FAT_MVM_DEMO
data dir : missing suma_demo
data dir : found afni_handouts under $HOME/afni_class_data
atlas : found TT_N27+tlrc under /home/dowdlelt/abin
------------------------------ OS specific -------------------------------
which apt-get : /usr/bin/apt-get
apt-get version : apt 1.2.27 (amd64)
========================= summary, please fix: =========================
* login shell 'bash', trusting user to translate from 'tcsh'
* have python version 3.6.3, some programs need 2.7.x
* missing R packages (see rPkgsInstall)
* insufficient data for AFNI bootcamp
* consider running: apt-get install python-qt4
