AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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July 12, 2018 09:37PM
I tried installing libcurl4-openssl-dev as suggested by isospin in the "brms not installed" thread.

This fixed the afex and phia problem, but brms is still reported not installed.

It looks to me that PKI fails to install due to lack of openssl (even though I did sudo apt-get install libcurl4-openssl-dev) and that leads to brms not installed through a chain of dependencies

Any idea how to fix this?

Here us what rPkgsInstall -pkgs ALL returned

Quote

* installing *source* package ‘PKI’ ...
** package ‘PKI’ successfully unpacked and MD5 sums checked
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking openssl/ssl.h usability... no
checking openssl/ssl.h presence... no
checking for openssl/ssl.h... no
checking openssl/rsa.h usability... no
checking openssl/rsa.h presence... no
checking for openssl/rsa.h... no
configure: error: Failed to find usable crypto library. Please install openssl-dev or equivalent and/or set PKG_LIBS if not in default location.
ERROR: configuration failed for package ‘PKI’
* removing ‘/home/pawel/R/PKI’
ERROR: dependency ‘PKI’ is not available for package ‘rsconnect’
* removing ‘/home/pawel/R/rsconnect’
ERROR: dependency ‘rsconnect’ is not available for package ‘shinystan’
* removing ‘/home/pawel/R/shinystan’
ERROR: dependency ‘shinystan’ is not available for package ‘brms’
* removing ‘/home/pawel/R/brms’
Subject Author Posted

Installation: missing R Packages

Pawel July 12, 2018 04:57PM

Re: Installation: missing R Packages

Pawel July 12, 2018 09:37PM

Re: Installation: missing R Packages

Colm Connolly July 13, 2018 09:23AM

Re: Installation: missing R Packages

Pawel July 13, 2018 10:51AM