AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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April 16, 2020 11:53PM
Hi Gang and Paul,
I want to compare connectivity matrices (.netcc files with 106 ROIs in each) between a single patient and a group of healthy controls, simply like in a more typical situation of voxel-wise 1-sample t-test with "3dttest -base1_dset". I could have done this with 3dttest by "dumping" the .netcc files into some 1D files; but since I have never used the "FAT MVM" tools before, I would like to try these tools first. My preparations with fat_mvm_prep.py and fat_mvm_scripter.py went successfully. The execution of "tcsh PREFIX_scri.tcsh" was initially stumbled on the issue of "Argument list too long" as previously discussed here (https://afni.nimh.nih.gov/afni/community/board/read.php?1,158457,158457#msg-158457), but I have bypassed this issue by "ulimit -s 65536" as suggested here (https://unix.stackexchange.com/questions/45583/argument-list-too-long-how-do-i-deal-with-it-without-changing-my-command). However, when 3dMVM was finally running for a few minutes, it threw out a simple error message of "Error parsing arguments. See 3dMVM -help for details". Could you please point me to the right direction on trouble shooting this error?

Thanks a lot for your help!
Subject Author Posted

1-sample t-test with 3dMVM and fatcat

Zhihao_Li April 16, 2020 11:53PM