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August 07, 2018 05:17PM
Hi Tamara-

That's a curious error message. Can you post your entire afni_proc.py command?

Also, it's worth updating your binaries for a variety of reasons. But one of the main ones is that we're currently recommending doing the nonlinear warp (and skull strip) outside of afni_proc.py using @SSwarper. An example usage is:

@SSwarper -input  9409.anat+orig -base MNI152_2009_template_SSW.nii.gz -subid 9409

You would then provide the outputs of that script to afni_proc.py:

-tlrc_NL_warp -tlrc_NL_warped_dsets anatQQ.${subj}.nii anatQQ.${subj}.aff12.1D anatQQ.${subj}_WARP.nii

-Peter
Subject Author Posted

Error in affine step

tamtam August 07, 2018 05:01PM

Re: Error in affine step

Peter Molfese August 07, 2018 05:17PM

Re: Error in affine step Attachments

tamtam August 08, 2018 08:31AM

Re: Error in affine step

rick reynolds August 09, 2018 09:20AM

Re: Error in affine step

tamtam August 29, 2018 02:06PM

Re: Error in affine step

ptaylor August 29, 2018 02:21PM

Re: Error in affine step

tamtam August 29, 2018 02:44PM

Re: Error in affine step

ptaylor August 29, 2018 03:02PM

Re: Error in affine step

tamtam August 29, 2018 03:56PM

Re: Error in affine step

ptaylor August 29, 2018 04:42PM

Re: Error in affine step

tamtam August 30, 2018 10:01AM

Re: Error in affine step

ptaylor August 30, 2018 10:50AM

Re: Error in affine step

tamtam August 31, 2018 08:26AM



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