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Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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tamtam
August 29, 2018 02:44PM
Below is my full script. I tried to re-order my blocks by putting the volreg blocks prior to the tlrc_NL blocks but I am still receiving the same error message

Script:

afni_proc.py -subj_id SSwarp_proc_9409 -script SSwarp_proc_9409 \
-scr_overwrite -blocks tshift align tlrc volreg blur mask scale regress \
-copy_anat /home/bmiadmin/Tamara/PRR_Analysis/9409/9409.anat+orig \
-dsets /home/bmiadmin/Tamara/PRR_Analysis/9409/9409.1+orig.HEAD \
/home/bmiadmin/Tamara/PRR_Analysis/9409/9409.2+orig.HEAD \
/home/bmiadmin/Tamara/PRR_Analysis/9409/9409.3+orig.HEAD \
/home/bmiadmin/Tamara/PRR_Analysis/9409/9409.4+orig.HEAD \
-tcat_remove_first_trs 0 \
-volreg_align_to last -volreg_align_e2a -volreg_tlrc_warp \
-tlrc_base MNI152_2009_template_SSW.nii.gz \
-tlrc_NL_warp -tlrc_NL_warped_dsets \
anatQQ.MNI152_2009_template_SSW.nii.gz.nii \
anatQQ.MNI152_2009_template_SSW.nii.gz.aff12.1D \
anatQQ.MNI152_2009_template_SSW.nii.gz_WARP.nii \
-blur_size 4.0 -regress_stim_times \
/home/bmiadmin/Tamara/PRR_Analysis/9409/NonRevP_learn_corr_fed.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/NonRevP_learn_corr.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/NonRevP_learn_incor_fed.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/NonRevP_learn_incor.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/NonRevP_perf_corr_fed.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/NonRevP_perf_corr.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/NonRevP_perf_incor_fed.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/NonRevP_perf_incor.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/RevP_acq_corr_fed.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/RevP_acq_corr.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/RevP_acq_incor_fed.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/RevP_acq_incor.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/RevP_rev_corr_fed.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/RevP_rev_corr.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/RevP_rev_incor_fed.txt \
/home/bmiadmin/Tamara/PRR_Analysis/9409/RevP_rev_incor.txt \
-regress_stim_labels NonRevP_learn_corr_fed NonRevP_learn_corr \
NonRevP_learn_incor_fed NonRevP_learn_incor NonRevP_perf_corr_fed \
NonRevP_perf_corr NonRevP_perf_incor_fed NonRevP_perf_incor \
RevP_acq_corr_fed RevP_acq_corr RevP_acq_incor_fed RevP_acq_incor \
RevP_rev_corr_fed RevP_rev_corr RevP_rev_incor_fed RevP_rev_incor \
-regress_basis dmBLOCK -regress_stim_types AM1 -regress_censor_motion \
2.0 -regress_censor_outliers 0.1 -regress_apply_mot_types demean deriv \
-regress_motion_per_run -regress_make_ideal_sum sum_ideal.1D \
-regress_est_blur_epits -regress_est_blur_errts -regress_run_clustsim no
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Subject Author Posted

Error in affine step

tamtam August 07, 2018 05:01PM

Re: Error in affine step

Peter Molfese August 07, 2018 05:17PM

Re: Error in affine step Attachments

tamtam August 08, 2018 08:31AM

Re: Error in affine step

rick reynolds August 09, 2018 09:20AM

Re: Error in affine step

tamtam August 29, 2018 02:06PM

Re: Error in affine step

ptaylor August 29, 2018 02:21PM

Re: Error in affine step

tamtam August 29, 2018 02:44PM

Re: Error in affine step

ptaylor August 29, 2018 03:02PM

Re: Error in affine step

tamtam August 29, 2018 03:56PM

Re: Error in affine step

ptaylor August 29, 2018 04:42PM

Re: Error in affine step

tamtam August 30, 2018 10:01AM

Re: Error in affine step

ptaylor August 30, 2018 10:50AM

Re: Error in affine step

tamtam August 31, 2018 08:26AM