AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

Previous Message Next Message
Message List New Topic Print View
|
rick reynolds
August 13, 2018 04:31PM
Hi Daniel,

On one hand, that -blur_opts_BIM option is missing an internal step for applying it. I will fix that.

On the other hand, neither of those options is appropriate for being passed via -blur_opts_BIM. Basically, options passed that way in general should be ones that afni_proc.py does not (need to) know about.

The blur size should be specified via -blur_size.

But there is no mechanism to blur in only the gray matter, or to specify the blur mask via a generic lablel. Relevant options might include:
-blur_in_mask yes
-blur_in_automask
-blur_size SIZE
-mask_epi_anat yes

- rick
Reply Quote
RSS
Subject Author Posted

Usage of blur_opts_BIM

Daniel Zhu August 10, 2018 03:13PM

Re: Usage of blur_opts_BIM

rick reynolds August 13, 2018 04:31PM

Re: Usage of blur_opts_BIM

Daniel Zhu August 14, 2018 08:11PM