AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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sondosayyash
August 13, 2018 01:45PM
Hi there,

I am trying to run 3dTrackID for probabilistic tractography 

3dTrackID -mode PROB -dti_in /Users/dti-afni*.nii.gz -netrois /Users/ROIs_GMI.nii.gz -uncert /Users/dti-afni_dwuncert.nii.gz -alg_Thresh_FA 0.2 -alg_Thresh_Frac 0.1 -alg_Nseed_Vox 5 -alg_Nmonte 1000 -prefix network6

However, every time I run this code I get the following error:

** ERROR: Failed to load '-netrois' options.

I'm not sure why I keep getting this message. I used the GMI output from 3dROIMaker and transformed it into diffusion weighted space.

Thanks for your time, looking forward to your response.
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Subject Author Posted

3dtrackID ERROR failed to load netrois

sondosayyash August 13, 2018 01:45PM

Re: 3dtrackID ERROR failed to load netrois

ptaylor August 13, 2018 02:10PM

Re: 3dtrackID ERROR failed to load netrois

sondosayyash August 13, 2018 02:29PM

Re: 3dtrackID ERROR failed to load netrois

ptaylor August 13, 2018 02:58PM