AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
August 21, 2018 11:01AM
Hi, Bit-Warrior-

(DIFFPREP questions will have to go to the TORTOISE folks. I will just note that it is possible in v3.1.1 and onward to dwi/bvecs/bvals files directly into it, using option flags of those names.)

Can I please have some more details of what you are trying to do and precisely what isn't working?

1dDW_Grad_o_Mat++ can have many types of bvec/grad/bmatrix and bval. The input flags start with "in" are:
-in_bvals     -in_col_matA  -in_col_matT  -in_col_vec   -in_row_vec

If you have a Siemens (or other) gradient table file in good standing, then you should be able to use likely either -in_col_vec or -in_row_vec, depending on whether it is column- or row-oriented, respectively. Do you want to multiple a b-value times it? Or something else? Perhaps you could copy+paste the specific grad table here (or at least a few lines) and describe what you want to do with it using 1dDW_Grad_o_Mat++?

--pt
Subject Author Posted

1dDW_Grad_o_Mat++ and DIFFPREP

bit-warrior August 21, 2018 10:42AM

Re: 1dDW_Grad_o_Mat++ and DIFFPREP

ptaylor August 21, 2018 11:01AM

Re: 1dDW_Grad_o_Mat++ and DIFFPREP

bit-warrior August 21, 2018 11:21AM

Re: 1dDW_Grad_o_Mat++ and DIFFPREP

ptaylor August 21, 2018 11:45AM