afni.nimh.nih.gov

Dear AFNI users,

I would like to compare severals binary maps to a reference map.
My aim is to find the maps that best overlap with this reference map (for example by counting the number of overlapping voxels with 3dOverlap and then selected the maps with the maximum value), to further process this 'selected' map with 3dcalc.

But I'm a bit lost with the loop and shell language issue.... How should I proceed?

Thank you for your help.

Best,


Carole