AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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September 14, 2018 01:48PM
Hello again, I'm trying to run a 2 x 3 ANOVA (using all between-subject factors) with 3dMVM, but I can't figure out how to designate gltlabels in the first few lines for the factor with three levels (NoiseLevel = quiet, enoise, noise). Based on info from the help page, I've tried the following:

#!/bin/tcsh
3dMVM -mask clippedfullmask.nii -prefix Noise -jobs 4 \
-model 1 \
-wsVars "oxy*noiseLevel" \
-num_glt 2 \
-gltLabel 1 OxyEff -gltCode 1 'oxy : 1*HbO -1*HbR' \
-gltLabel 2 NoiseLevelEff -gltCode  2 'NoiseLevel : 1*enoise +1*noise -2*quiet' \
-dataTable \

and

#!/bin/tcsh
3dMVM -mask clippedfullmask.nii -prefix Noise -jobs 4 \
-model 1 \
-wsVars "oxy*noiseLevel" \
-num_glt 2 \
-gltLabel 1 OxyEff -gltCode 1 'oxy : 1*HbO -1*HbR' \
-gltLabel 2 NoiseLevelEff -gltCode  2 'NoiseLevel : 1*quiet -1*enoise & 1*quiet -1*noise' \
-dataTable \

I get the following error:

** Error:
The number of -gltCode is not consistent with that
specified by -num_glt 2
Warning messages:
1: In grep("^-.*", args) : input string 25 is invalid in this locale
2: In grep("^\".*\"$", pp) : input string 1 is invalid in this locale
3: In grep("^'.*'$", pp) : input string 1 is invalid in this locale
4: In grep("^1D:.*$", pp) : input string 1 is invalid in this locale
5: In grep("^R:.*$", pp) : input string 1 is invalid in this locale
tcsh -x MVMnoise.txt &

Any help is appreciated, thanks again.

JD
Subject Author Posted

question about how to code MVM gltlabel 2 x 3 ANOVA

defenderfer September 14, 2018 01:48PM

Re: question about how to code MVM gltlabel 2 x 3 ANOVA

gang September 14, 2018 05:07PM

Re: question about how to code MVM gltlabel 2 x 3 ANOVA

defenderfer September 17, 2018 01:42PM