AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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January 16, 2019 09:30AM
Hi Qiuhai,

That's a good observation, that every time point is offset by those same values.
And yes, it is done for the regression.

That is the effect of the -demean option. Every time point has the original mean
subtracted out. It has only the very minor effect on the regression to make the
constant terms from the regression, if one asks for them, more representative
as a baseline value.

Remove -demean from the 1d_tool.py command that makes the motion_deriv.1D
dataset, and you should see the zeros. Also, that will not affect any of your beta
weights of interest (just the constant terms).

- rick
Subject Author Posted

Creating censor file for 3dDeconvolve

Dan October 06, 2018 12:21PM

Re: Creating censor file for 3dDeconvolve

rick reynolds October 11, 2018 09:26AM

Re: Creating censor file for 3dDeconvolve

qiuhai January 15, 2019 05:16PM

Re: Creating censor file for 3dDeconvolve

rick reynolds January 16, 2019 09:30AM

Re: Creating censor file for 3dDeconvolve

qiuhai January 19, 2019 12:49AM

Re: Creating censor file for 3dDeconvolve

qiuhai January 22, 2019 06:31PM