Hi Dillon,
It took a little long to hunt this problem down. Indeed,
when specifying unlimited duration decay rest times,
the minimum periods where actually being shifted to
the end of the run, into the post-stim rest period.
This is now fixed, and I will start a new build shortly.
You should be able to get an update for this in 2-3 hours
(check "afni_history 3", say, to see the update note).
Thanks for letting me know!
- rick