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Sincerely, AFNI HQ

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kxd344
October 09, 2018 11:42AM
Program Compile Date: Aug 28 2018

I am running @auto_tlrc. Here is the command:
@auto_tlrc -no_ss -init_xform AUTO_CENTER -OK_maxite -base $Templates/MNI152_T1_2009c_$sid+tlrc. -input $sid.anat_brain+orig.

*The MNI152_T1_2009c_$sid+tlrc is simply a complete copy of the original template (used 3dcopy for that). That was simply to make it more accessible since I am running many different $sid at the same time over multiple servers.

Generally @auto_tlrc is successful, but there are times when it appears to run into an error within the 3dWarp section and therefore fails to create an output. The first error I see is:
** ERROR: Can't open dataset __ats_tmp__resamp_NN+tlrc.HEAD
Then later:
** FATAL ERROR: Can't open -base dataset __ats_tmp__ref_MNI152_T1_2009c_CT_003_M7_40pad+tlrc
Finally:
Bad exit status from 3dWarpDrive

Here is the complete output log of the @auto_tlrc (I also run a 3dcopy to convert a file from .nii to afni format and the beginning might be from the 3dcopy...):
++ 3dcopy: AFNI version=AFNI_18.2.15 (Aug 28 2018) [64-bit]
++ 3drefit: AFNI version=AFNI_18.2.15 (Aug 28 2018) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset ./CT_003_M7.anat_brain_shft+orig
+ deoblique
++ 3drefit processed 1 datasets
++ 3drename: AFNI version=AFNI_18.2.15 (Aug 28 2018) [64-bit]
++ THD_rename_dataset_files: rename CT_003_M7.anat_brain_shft+orig.HEAD -> __ats_tmp__CT_003_M7.anat_brain_shft+orig.HEAD
++ THD_rename_dataset_files: rename CT_003_M7.anat_brain_shft+orig.BRIK -> __ats_tmp__CT_003_M7.anat_brain_shft+orig.BRIK
** THD_rename_dataset_files: old header CT_003_M7.anat_brain_shft+acpc.HEAD doesn't exist!
** THD_rename_dataset_files: old header CT_003_M7.anat_brain_shft+tlrc.HEAD doesn't exist!
++ 3dWarp: AFNI version=AFNI_18.2.15 (Aug 28 2018) [64-bit]
++ Authored by: RW Cox
Center distance of 0.000000 mm
Padding ...
++ 3dZeropad: AFNI version=AFNI_18.2.15 (Aug 28 2018) [64-bit]
++ output dataset: ./__ats_tmp__ref_MNI152_T1_2009c_CT_003_M7_40pad+tlrc.BRIK
Resampling ...
++ 3dcalc: AFNI version=AFNI_18.2.15 (Aug 28 2018) [64-bit]
++ Authored by: A cast of thousands
++ Output dataset ././__ats_tmp__resamp_step+orig.BRIK
++ 3dcalc: AFNI version=AFNI_18.2.15 (Aug 28 2018) [64-bit]
++ Authored by: A cast of thousands
++ Output dataset ././__ats_tmp__resamp+tlrc.BRIK
Clipping -0.000100 4345.000100 ...
++ 3dcalc: AFNI version=AFNI_18.2.15 (Aug 28 2018) [64-bit]
++ Authored by: A cast of thousands
++ Output dataset ./__ats_tmp___rs_pre.CT_003_M7.anat_brain+tlrc.BRIK
++ 3drefit: AFNI version=AFNI_18.2.15 (Aug 28 2018) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset __ats_tmp___rs_pre.CT_003_M7.anat_brain+tlrc.HEAD
+ changing dataset view code
+ Changed dataset view type and filenames.
++ 3drefit processed 1 datasets
++ 3drefit: AFNI version=AFNI_18.2.15 (Aug 28 2018) [64-bit]
++ Authored by: RW Cox
** ERROR: Can't open dataset __ats_tmp__resamp_NN+tlrc.HEAD
++ 3drefit processed 0 datasets
++ 3drefit: AFNI version=AFNI_18.2.15 (Aug 28 2018) [64-bit]
++ Authored by: RW Cox
++ Processing AFNI dataset __ats_tmp__resamp_edge_art+tlrc.HEAD
+ changing dataset view code
+ Changed dataset view type and filenames.
++ 3drefit processed 1 datasets
Registration (linear final interpolation) ...
++ 3dWarpDrive: AFNI version=AFNI_18.2.15 (Aug 28 2018) [64-bit]
++ Authored by: RW Cox
** FATAL ERROR: Can't open -base dataset __ats_tmp__ref_MNI152_T1_2009c_CT_003_M7_40pad+tlrc
** Program compile date = Aug 28 2018
Bad exit status from 3dWarpDrive

Thank you very much!
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Subject Author Posted

3dWarp Occasional Error from @auto_tlrc

kxd344 October 09, 2018 11:42AM

Re: 3dWarp Occasional Error from @auto_tlrc

rick reynolds October 11, 2018 09:41AM