AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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October 11, 2018 09:57AM
Hi AFNI/SUMA users:

I'm having problems running: @SUMA_Make_Spec_FS -NIFTI -sid subject1
I am using macOS Sierra 10.12.5.

When I run this, it creates SUMA folder and start adding files in the folder. At some point it stops with the following message:
...
writing to /Applications/freesurfer/subjects/TacFreqEnc01/./SUMA/wm.seg.nii...
-- running 'mris_convert lh.smoothwm lh.smoothwm.asc'
Abort
dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib

dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib

dyld: Symbol not found: ___emutls_get_address
Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib
Expected in: /usr/lib/libSystem.B.dylib

Abort
c_ras: Subscript out of range.
c_ras: Subscript out of range.


I tried several options recommended from previous posts, including the ones here:
[mail.nmr.mgh.harvard.edu]
[afni.nimh.nih.gov]

None of them worked. Any recommendation is highly appreciated!

Thanks in advance!



Edited 1 time(s). Last edit at 10/11/2018 10:00AM by swallowwly.
Subject Author Posted

Error using @SUMA_Make_Spec_FS

swallowwly October 11, 2018 09:57AM

Re: Error using @SUMA_Make_Spec_FS

ptaylor October 11, 2018 10:01AM

Re: Error using @SUMA_Make_Spec_FS

swallowwly October 11, 2018 11:22AM

Re: Error using @SUMA_Make_Spec_FS

ptaylor October 11, 2018 03:10PM

Re: Error using @SUMA_Make_Spec_FS

swallowwly October 11, 2018 03:51PM

Re: Error using @SUMA_Make_Spec_FS

SarahChang August 11, 2020 04:29AM

Re: Error using @SUMA_Make_Spec_FS

SarahChang August 11, 2020 04:56AM

Re: Error using @SUMA_Make_Spec_FS

ptaylor August 11, 2020 03:33PM

Re: Error using @SUMA_Make_Spec_FS

rick reynolds August 11, 2020 06:00PM

Re: Error using @SUMA_Make_Spec_FS

SarahChang August 13, 2020 04:11AM

Re: Error using @SUMA_Make_Spec_FS

rick reynolds August 13, 2020 09:12AM