ptaylor Wrote:
-------------------------------------------------------

> What version of linux do you have? That is, what
> is the output of:
> lsb_release -a

No LSB modules are available.
Distributor ID: Ubuntu
Description: Ubuntu 16.04.4 LTS
Release: 16.04
Codename: xenial



>
> Note that you can preserve your tailorings
> (though, I'm not sure by what you mean as your
> "smoothing" in the AFNI GUI?) by setting values in
> teh ~/.afnirc file.

Thank you, I'll look into it. I have some options saved there, like orientation. I forgot what the actual name of that smoothing option is in GUI (and having no access to AFNI, I can't check!) , maybe it's resampling, the visual effect is smoothing of activation overlay, options are NN(nearest neighbor), linear and more.


> I don't know what a power outage would have
> done/changed. For starters, what is your PATH on
> the machine:
> echo $PATH

/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/c/Program:Files:(x86)/Common:Files/Intel/Shared:Files/cpp/Bin/Intel64:/mnt/c/Program:Files:(x86)/Intel/iCLS:Client:/mnt/c/Program:Files/Intel/iCLS:Client:/mnt/c/Windows/System32:/mnt/c/Windows:/mnt/c/Windows/System32/wbem:/mnt/c/Windows/System32/WindowsPowerShell/v1.0:/mnt/c/Program:Files:(x86)/Intel/Intel(R):Management:Engine:Components/DAL:/mnt/c/Program:Files/Intel/Intel(R):Management:Engine:Components/DAL:/mnt/c/Program:Files:(x86)/Intel/Intel(R):Management:Engine:Components/IPT:/mnt/c/Program:Files/Intel/Intel(R):Management:Engine:Components/IPT:/mnt/c/Program:Files/MATLAB/R2017b/bin:/mnt/c/Program:Files/MATLAB/R2016a/bin:/mnt/c/Windows/System32/OpenSSH:/mnt/c/FPC/3.0.4/bin/i386-win32:/mnt/c/Users/pawel/AppData/Local/Microsoft/WindowsApps:/home/pawel/abin

This is weird, why would Linux have my windows matlab in the path? Anyway, does not matter really.


> And what is your display:
> echo $DISPLAY

DISPLAY: Undefined variable.

(though at this point I can only use this machine remotely, I can re-check DISPLAY locally on Monday)

>
> Note that you have click on the VcXsrv Windows X
> Server icon *each time* before starting your Linux
> terminal-- that is just how Windows designed
> things for allowing X-stuff through the terminal.

Yes, I remember to always do this!