AFNI Message Board

History of AFNI updates  

|
November 26, 2020 05:17PM
I am reviving this thread because I ran into the same problem though in a new installation and under different circumstances.

So I just installed AFNI on a windows computer, using instructions from
[afni.nimh.nih.gov]
and
[afni.nimh.nih.gov]

The installation went kind of OK, bdrm would not install despite trying the suggested fix (If you are using Windows Subsystem Linux (WSL), and/or if your ‘brms’ package fails to install (as checked in the “Evaluation” step below)...), but I googled around, tried other solutions, and ultimately
afni_system_check.py -check_all said:
=========================  summary, please fix:  =========================
*  just be aware: login shell 'bash', but our code examples use 'tcsh'


But if I try:
afni

I get
Precompiled binary linux_ubuntu_16_64: Nov 12 2020 (Version AFNI_20.3.02 'Vespasian')


** Version check disabled: AFNI_VERSION_CHECK forbids
Thanks go to MM Klosek for inspiration

Initializing: X11Error: Can't open display: :0.0
++ AFNI is detached from terminal.

And yes I did start VcXsrv \ XLaunch prior to starting Ubuntu.

Here is other possibly relevant info:

Windows
Microsoft Windows 10 Enterprise 10.0.20262 Build 20262


wsl --status
Default Distribution: Ubuntu-18.04
Default Version: 2
Windows Subsystem for Linux was last updated on 11/26/2020
Kernel version: 5.4.72



lsb_release -a
No LSB modules are available.
Distributor ID: Ubuntu
Description:    Ubuntu 18.04.5 LTS
Release:        18.04
Codename:       bionic


I did run
echo "export DISPLAY=:0.0" >> ~/.bashrc
echo "setenv DISPLAY :0.0" >> ~/.cshrc
echo "export NO_AT_BRIDGE=1" >> ~/.bashrc
echo "setenv NO_AT_BRIDGE 1" >> ~/.cshrc
and closed Ubuntu terminal afterwards (also restarted the computer)

$ echo $DISPLAY
:0.0


echo $PATH
/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/mnt/c/Program Files/WindowsApps/CanonicalGroupLimited.Ubuntu18.04onWindows_1804.2020.824.0_x64__79rhkp1fndgsc:/mnt/c/Program Files/Python38/Scripts/:/mnt/c/Program Files/Python38/:/mnt/c/Program Files (x86)/Common Files/Oracle/Java/javapath:/mnt/c/ProgramData/Oracle/Java/javapath:/mnt/c/Program Files (x86)/Common Files/Intel/Shared Files/cpp/bin/Intel64:/mnt/c/WINDOWS/system32:/mnt/c/WINDOWS:/mnt/c/WINDOWS/System32/Wbem:/mnt/c/WINDOWS/System32/WindowsPowerShell/v1.0/:/mnt/c/Program Files/MATLAB/R2020a/bin:/mnt/c/Program Files/MATLAB/R2019a/bin:/mnt/c/Program Files/MATLAB/R2019a/bin/win64:/mnt/c/WINDOWS/System32/OpenSSH/:/mnt/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common:/mnt/c/WINDOWS/system32:/mnt/c/WINDOWS:/mnt/c/WINDOWS/System32/Wbem:/mnt/c/WINDOWS/System32/WindowsPowerShell/v1.0/:/mnt/c/WINDOWS/System32/OpenSSH/:/mnt/c/Users/Pawel/AppData/Local/Microsoft/WindowsApps:/mnt/c/Users/Pawel/AppData/Local/Microsoft/WindowsApps:/snap/bin:/home/pawel/abin

I would be grateful for any suggestions how to fix it.

I also have an unrelated question:
The instructions for installing AFNI on windows only mention Ubuntu 16.04 and 18.04. But after I installed specifically Ubuntu 18.04 and AFNI, I saw that you are also providing instructions for installing AFNI on Ubuntu 20.04. Is there any reason why one should not install AFNI on Ubuntu 20.04 on Windows/WSL - or is it just an oversight and the link to 20.04 instructions has not been added to Windows instructions?

P.S. funny I am posting exactly 2 years after the previous post in the thread



Edited 1 time(s). Last edit at 11/26/2020 05:18PM by Pawel.
Subject Author Posted

X11Error: Can't open display on Windows

Pawel November 22, 2018 03:12PM

Re: X11Error: Can't open display on Windows

ptaylor November 22, 2018 09:10PM

Re: X11Error: Can't open display on Windows

Pawel November 23, 2018 08:46AM

Re: X11Error: Can't open display on Windows

ptaylor November 23, 2018 09:53AM

Re: X11Error: Can't open display on Windows

Pawel November 23, 2018 10:02AM

Re: X11Error: Can't open display on Windows

Pawel November 26, 2018 11:05AM

Re: X11Error: Can't open display on Windows

rick reynolds November 26, 2018 11:37AM

Re: X11Error: Can't open display on Windows

Pawel November 26, 2018 11:57AM

Re: X11Error: Can't open display on Windows

Pawel November 26, 2020 05:17PM

Re: X11Error: Can't open display on Windows

Daniel Glen November 30, 2020 12:59AM

Re: X11Error: Can't open display on Windows

Pawel November 30, 2020 10:49AM

Re: X11Error: Can't open display on Windows

Daniel Glen November 30, 2020 03:12PM



Sorry, only registered users may post in this forum.

Click here to login