AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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rick reynolds
December 11, 2018 12:30PM
Hi Christine,

Just to add to Colm's good example, there are 2 things that go wrong in your example, though Dimon could be updated to handle them.

One is that the GERT_Reco scripts use a simple 'mkdir' command to make directories. If intermediate directories are needed, that would fail. It can be updated to include the -p option.

The other is specifying a NIFTI prefix is not reconciled with outdir and -gert_write_as_nifti.

I will fix both of those things and run a new build tonight.

Thanks,

- rick
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Subject Author Posted

how to write Dimon output files into gert_outdir

Christine Smith December 07, 2018 08:15PM

Re: how to write Dimon output files into gert_outdir

Colm Connolly December 11, 2018 10:44AM

Re: how to write Dimon output files into gert_outdir

rick reynolds December 11, 2018 12:30PM

Re: how to write Dimon output files into gert_outdir

rick reynolds December 12, 2018 09:19AM