Hello AFNI Experts,
I plan to merge DTI and resting state data. I will have resting state ICA networks guide the DTI tractography analysis.
I was planning to feed in the group ICA maps generated from Group Melodic in FSL into 3dROIMaker.
However, there are a lot of options to choose from in 3dROImaker and was unsure how to optimize. I was not sure what thresholding parameters to do, inflation amounts, etc. I was wondering if anyone had any advice on optimizing 3dROImaker for this particular scenario?
Also, the group melodic map has 30 components. Is there somewhere in 3dROImaker where I can select the component that I will run 3dROImaker on? Or will I need to separate out the components?
I would appreciate any advice to help get me started!
Emily