AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

Previous Message Next Message
Message List New Topic Print View
|
vferrer
January 14, 2019 08:42AM
Hi there,

We are trying the new installation of AFNI and SUMA in our cluster and trying my scripts I got the next error:

@SUMA_Make_Spec_FS -NIFTI -fspath $SUBJECTS_DIR/$SUBJ -sid $SUBJ -debug 2
-- usage okay
if ( 0 ) set ldlist = ( )
if ( 0 == 0 && 2 != 0 ) then
set ldpref = ( )
foreach lldd ( 141 60 )
set ldpref = ( std.141. )
end
set ldpref = ( std.141. std.60. )
end
endif
if ( 2 != 0 && 2 != 2 ) then
set spec_files = ( {sub-006ParkAmrPm}_lh.spec {sub-006ParkAmrPm}_rh.spec )
set afni_prefix = sub-006ParkAmrPm_SurfVol
if ( -1 != -1 ) then
set afni_dataset = sub-006ParkAmrPm_SurfVol
endif
cd /scratch/vferrer/PARK_VFERRER//FREESURFER/sub-006ParkAmrPm
set start_dir = /dipc/vferrer/PARK_VFERRER/FREESURFER/sub-006ParkAmrPm
if ( 2 ) echo -- using start_dir '/dipc/vferrer/PARK_VFERRER/FREESURFER/sub-006ParkAmrPm'
echo -- using start_dir '/dipc/vferrer/PARK_VFERRER/FREESURFER/sub-006ParkAmrPm'
-- using start_dir '/dipc/vferrer/PARK_VFERRER/FREESURFER/sub-006ParkAmrPm'
goto L_PARSE_COMMAND_DONE
goto L_VERIFY_PROGRAMS
set failed_pgms = 0
foreach test_command ( afni to3d suma mris_convert )
if ( 0 ) then
end
if ( 0 ) then
end
if ( 0 ) then
end
if ( 0 ) then
end
if ( 0 ) then
foreach test_command ( afni mris_convert )
afni --version
if ( 127 ) then
echo program failure: afni
program failure: afni
@ failed_pgms ++
endif
end
mris_convert --version
if ( 0 ) then
end
if ( 1 ) then
set endstr = 1 program(s) not working correctly
goto L_BAD_END
echo

if ( 1 program(s) not working correctly != ) echo 1 program(s) not working correctly
echo 1 program(s) not working correctly
1 program(s) not working correctly
echo program failure: exiting...
program failure: exiting...
echo

exit

It seems that like @SUMA_Make_Spec_FS does not detect AFNI, do you know what could be the problem?

Thanks in advance,
Vicente.
Reply Quote
RSS
Subject Author Posted

AFNI not working error in @SUMA_Make_Spec_FS

vferrer January 14, 2019 08:42AM

Re: AFNI not working error in @SUMA_Make_Spec_FS

ptaylor January 14, 2019 09:13AM