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January 18, 2019 08:08PM
To visualize the time course:
1. You can create an ROI in AFNI
2. Extract the time series (3dmaskave) from your full preprocessed data (usually the all_runs)
3. Plot the time series compared to your design (1dplot)

You can also set the underlay to your functional dataset, click on an active voxel, and bring up the graph viewer, and under one of the dropdown menus you can plot the ideal for a condition on top of the graph of the voxel activity. Let me know if you have followup questions!

Some tidbits of this in one of Andy's YouTube videos.
Subject Author Posted

Issue with stats in afni_proc.py Attachments

wilxl8 January 17, 2019 02:48PM

Re: Issue with stats in afni_proc.py

Peter Molfese January 17, 2019 02:55PM

Re: Issue with stats in afni_proc.py

rick reynolds January 17, 2019 05:03PM

Re: Issue with stats in afni_proc.py

ptaylor January 17, 2019 06:13PM

Re: Issue with stats in afni_proc.py

wilxl8 January 18, 2019 11:42AM

Re: Issue with stats in afni_proc.py

ptaylor January 18, 2019 01:41PM

Re: Issue with stats in afni_proc.py

wilxl8 January 18, 2019 04:26PM

Re: Issue with stats in afni_proc.py

ptaylor January 18, 2019 05:20PM

Re: Issue with stats in afni_proc.py

Peter Molfese January 18, 2019 08:08PM



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