AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 02, 2019 08:59PM
I just did this for the amygdala in MNI space so this'll probably work for you.

whereami -mask_atlas_region CA_ML_18_MNIA::Putamen

Remember you're not using the TT atlas you're using the MNI atlas to get your ROI so you have to indicate that after the
-mask_atlas_region
flag.
A note though: This gives you the bilateral putamen because of the :: part of the code. If you want just the right or left put the corresponding word 'right' or 'left' in between the two colons (e.g.
 whereami -mask_atlas_region CA_ML_18_MNIA:left:Putamen

Overlaying this on an MNI brain looks like this is correct but please correct me if I am wrong.
Subject Author Posted

whereami: make MNI ROI

Robin January 24, 2019 10:52AM

Re: whereami: make MNI ROI

Peter Molfese January 24, 2019 12:09PM

Re: whereami: make MNI ROI

Daniel Glen January 24, 2019 06:24PM

Re: whereami: make MNI ROI

Emmanuelle Renauld February 01, 2019 11:06AM

Re: whereami: make MNI ROI

Daniel Glen February 01, 2019 02:18PM

Re: whereami: make MNI ROI

lhopkins February 02, 2019 08:59PM

Re: whereami: make MNI ROI

Daniel Glen February 03, 2019 09:05PM

Re: whereami: make MNI ROI

lhopkins February 04, 2019 07:55PM

Re: whereami: make MNI ROI

Daniel Glen February 04, 2019 11:11PM