AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Christine Smith
January 29, 2019 06:55PM
Hello,

We are using afni_proc's volreg to align data to MIN_OUTLIER. We do not want to remove the first two time points of each run with 3dTcat. At the same time, we want the 3dToutcount to ignore the first 2 time points in its calculations. Is there an option in afni_proc that would let us ignore the first 2 time points in 3dToutcount. As it stands, we generate the afni_proc code and modify it for each subject so that 3dToutcount uses '[2..$]'. We are hoping to not have to do this for every participant.

Tx,
Christine
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Subject Author Posted

MIN_OUTLIER ignore option

Christine Smith January 29, 2019 06:55PM

Re: MIN_OUTLIER ignore option

Cesar Caballero Gaudes January 30, 2019 01:45AM

Re: MIN_OUTLIER ignore option

rick reynolds January 30, 2019 11:25AM