AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

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Frastra
February 10, 2019 10:03AM
Dear Afni's experts,

I would like to register some EPI to the T1 that was collected in a separate session, keeping the original native resolution (3x3x3). I tried to use align_epi_anat.py but the functional run did not look well registered to the anatomical. I also would like to keep the same FoV size (64 64 50).

The functional data were preprocessed but I did not perform any operation on the T1. Ideally, I would like to keep the T1 as it is since all my ROIs are registered to this anatomical scan.

align_epi_anat.py -giant_move -anat sub3_t1.nii -epi sub3_imagery.nii -epi_base 0 -epi2anat

Thank you!
Francesca
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registration functional to anatomical subject space

Frastra February 10, 2019 10:03AM