AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
February 18, 2019 02:39PM
Hello,

new user here and struggling with what probably is a basic error.

Running the preprocessing I get this error and have searched online and on the message board to figure out what it could be to no avail.

The error is:

#Script is running (command trimmed):
3dNotes -h "auto_warp.py -base HaskinsPeds_NL_template1.0+tlrc -input \
sub-006_ses-T1_T1w_ns+orig -skull_strip_input no" \
./sub-006_ses-T1_T1w_ns.aw.nii

3dbucket -prefix sub-006_ses-T1_T1w_ns awpy/sub-006_ses-T1_T1w_ns.aw.nii
++ 3dbucket: AFNI version=AFNI_19.0.06 (Feb 4 2019) [64-bit]
** ERROR: output dataset name 'sub-006_ses-T1_T1w_ns' conflicts with existing file
** ERROR: dataset NOT written to disk!



For context, I am adding the afni_proc.py in case it's an error stemming from some specs in previous stages.

set datapath = /Users/nens.lab/Documents/PEN802_Spring2019/Scans/sub-006

afni_proc.py -subj_id prova2 \
-blocks tshift align tlrc volreg blur mask scale \
regress \
-copy_anat $datapath/ses-T1/anat/sub-006_ses-T1_T1w.nii.gz \
-dsets \
$datapath/ses-T1/func/sub-006_ses-T1_task-Sub_run-0?_bold.nii.gz \
-align_opts_aea -cost lpc+ZZ \
-tshift_interp -quintic \
-tlrc_base HaskinsPeds_NL_template1.0+tlrc \
-tlrc_NL_warp \
-volreg_align_to MIN_OUTLIER \
-volreg_align_e2a \
-volreg_tlrc_warp \
-regress_motion_per_run \
-regress_censor_motion 0.3 \
-regress_censor_outliers 0.1 \
-regress_reml_exec \
-regress_stim_times \
$datapath/ses-T1/stim/ETrue.tsv \
$datapath/ses-T1/stim/HTrue.tsv \
$datapath/ses-T1/stim/EFalse.tsv \
$datapath/ses-T1/stim/HFalse.tsv \
$datapath/ses-T1/stim/control_s.tsv \
-regress_stim_labels \
ET HT EF HF Ctrl_s \
-regress_basis GAM \
-regress_opts_3dD \
-jobs 4 \
-gltsym 'SYM: HTrue - ETrue' -glt_label 1 Ht-Et \
-gltsym 'SYM: HFalse - EFalse' -glt_label 2 Hf-Ef \
-regress_est_blur_epits \
-regress_est_blur_errts \


Thank you for any help or hint leading to the solution!
Ilaria
Subject Author Posted

3dBucket error: output dataset name 'filename" conflicts with existing file

Ilaria February 18, 2019 02:39PM

Re: 3dBucket error: output dataset name 'filename" conflicts with existing file

rick reynolds February 19, 2019 09:43AM

Re: 3dBucket error: output dataset name 'filename" conflicts with existing file

Ilaria February 19, 2019 04:28PM

Re: 3dBucket error: output dataset name 'filename" conflicts with existing file

rick reynolds February 21, 2019 09:57AM